GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:39:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:18752441-18752460
ACTATGAACTTTAGACTTCTCTTTGTACCT18752441CTTTCCGAGTTTCCATAGTGCATCACATATATATATAGCAATCATCTTAA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:13202225-13202244
ACTATGAACTTTAGACTTCTCTTTGTACCT13202225CTTTCCGAGTTTCCATAGTGCATCACATATATATATAGCAATCATCTTAA
Brassica rapa genome, scaffold: A04.
LR031576.1:12199789-12199808
TACATGAACTTTAGACTTCTCTTTGTACCT12199789CTTTCCGAGTTTCCATAGTGCATCACATATATAGCAATCATCTTAAATTG
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:12449907-12449926
TACATGAACTTTAGACTTCTCTTTGTACCT12449907CTTTCCGAGTTTCCATAGTGCATCACATATATAGCAATCATCTTAAATTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTTCCGAGTTTCCATAGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTTCCGAGTTTCCATAGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.110 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=CTTTCCGAGTTTCCATAGTG&k=0&no_gap=0&offset=0&limit=50
0.135 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=CACTATGGAAACTCGGAAAG&k=0&no_gap=0&offset=0&limit=46
0.135 | 0.000 | cgi_end;

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