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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:54:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:29042162-29042181
CTCTATCTCGTCCGATACTCTCTTCTTTCT29042162CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCATCTTTCTCTCTCTCAT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:11936330-11936349
CTTTATCTCGTCTGATCCTCTTTTTTTTCT11936330CTTTCCTTCAATCATCTCGTATTTTCTTCCTTCCTCTCTCATTTTTTTCT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:29393279-29393298
CTCTATCTCGTCCGATACTCTCTTCTTTCT29393279CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCATCTTTCTCTCTCTCAT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:12705502-12705521
CTCTATCTCGTCTGATCCTCTCTTCTTTAT12705502CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCCTCTCTCATTTTTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:30409186-30409205
CTCTATCTCGTCCGATACTCTCTTCTTTCT30409186CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCATCTTTCTCTCTCTCAT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:11831669-11831688
CTCTATCTCGTCTGATCCTCTCTTCTTTAT11831669CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCCTCTCTCATTTTTTTTT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:29462578-29462597
CTCTATCTCGTCCGATCCTCTCTTCTTTCT29462578CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCCTCTTTCTCTCTCTCAT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:28271792-28271811
CTCTATCTCGTCCGATCCTCTCTTCTTTCT28271792CTTTCCTTCAATCATCTCGTATTTTCTTCCCTTCTCTTTCTCTCTCTCTC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:12073424-12073443
CTCTATCTCGTCTGATCCTCTCTTCTTTAT12073424CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCCTCTCTCATTTTTTTTT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:29195425-29195444
CTCTATCTCGTCCGATCCTCTCTTCTTTCT29195425CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCCTCTTTCTCTCTCTCAT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:12703130-12703149
CTCTATCTCGTCTGATCCTCTCTTCTTTAT12703130CTTTCCTTCAATCATCTCGTATTTTCTTCCCCCCTCTCTCATTTTTCTCT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:29469143-29469162
CTCTATCTCGTCCGATCCTCTCTTCTTTCT29469143CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCCTCTTTCTCTCTCTCAT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:12690354-12690373
CTCTATCTCGTCTGATCCTCTCTTCTTTAT12690354CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCCTCTCTCATTTTTCTCT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:30068547-30068566
CTCTATCTCGTCCGATCCTCTCTTCTTTCT30068547CTTTCCTTCAATCATCTCGTATTTTCTTCCCTCCTCTTTCTCTCTCTCAT
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:4190242-4190261
CTCTATCTTGTCCGATCCTTTCTTCTTTCT4190242CTTTCCTTCAATCATCTCGTATTTTCTTCACTCCTCTATCCTCTTTCTCT
Metabacillus endolithicus strain KCTC 33579 chromosome.
CP095550.1:1928911-1928930
AAAATCATGATTTCCTAAAACATGATATTT1928911CTTTCCTTCAATCATCTCGTAGACTGGTAGAATTTGATCAAAACTCGACA
Cryptosula pallasiana genome assembly, chromosome: 1.
OX183130.1:32637587-32637606
TTCTCTTTCACTGATCTCTCCGTCAATCAT32637587CTTTCCTTCAATCATCTCGTTTTCACTCATCACTCCTCCACTCATCTCTC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:3254729-3254748
GGAGAGAGAGGAGAGAGGAGGAAAGAAAGT3254729ACGAGATGATTGAAGGAAAGAGAAAAAAGAAAGAGGATCGGACGAGATAG
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:3279964-3279983
GGAGAGAGAGGAGAGAGGAGGAAAGAAAGT3279964ACGAGATGATTGAAGGAAAGAGAAAAAAGAAAGAGGATCGGACGAGATAG
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:3112432-3112451
GGAGAGAGAGGAGAGAGGAGGAAAGAAAGT3112432ACGAGATGATTGAAGGAAAGAGAAAAAAGAAAGAGGATCGGACGAGATAG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:12257796-12257815
ATGAGAGAGAGAAAGAGGAGGGAAGAAAAT12257796ACGAGATGATTGAAGGAAAGAGAAAGAAGAGAGGATCGGACGAGATAGAG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:29300472-29300491
AGAGAAAAATGAGAGAGGAGGGAAGAAAAT29300472ACGAGATGATTGAAGGAAAGATAAAGAAGAGAGGATCAGACGAGATAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTTCCTTCAATCATCTCGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTTCCTTCAATCATCTCGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.331 | 0.323 | search_plus_done; http://172.18.8.135:50400/match?q=CTTTCCTTCAATCATCTCGT&k=0&no_gap=0&offset=0&limit=50
0.423 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=ACGAGATGATTGAAGGAAAG&k=0&no_gap=0&offset=0&limit=33
0.427 | 0.003 | cgi_end;

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