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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:12:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

000530AEPA003853HT (AEPA) Pinkie expanding leaf Malus domestica cDNA clone AEPA003853, mRNA sequence.
EB111342.1:225-244
ACCGTATTACCTCAAATCGTGTGTGTTATA225CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
TSA: Pyrus x bretschneideri Unigene83_XinShao mRNA sequence.
JR595509.1:342-361
ACCGTATTACCTCAAATCGTGCGTGTTATA342CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40138757-40138776
ACCGTATTACCTCAAATCGTGTGTGTTGTA40138757CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40158427-40158446
ACCGTATCACCTCAAATCACGTGTCTTATA40158427CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATGAGACTAGCTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40174128-40174147
ACCGTATTACCTCAAATCGTGTGTATTATA40174128CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40185217-40185236
ACCGTATTACCTCAAATCGTGTGTATTATA40185217CTTTGGCATCTTTCCCGAGGATTACTCAATTAGTCGGGGGAGATTAATTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29590262-29590281
ACCGTATCACCTCAAATCATGTGTCTTATA29590262CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGACTAGCTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29621857-29621876
ACCGTATTACCTCAAATCGTGTGTATTATA29621857CTTTGGCATCTTTCCCGAGGATTACTCAGTTAATTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29627345-29627364
ACCGTATCACCTCAAATCATGTGTCTTATA29627345CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGACTAGCTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29648363-29648382
GCCGTATTACCTCAAATCGTGTGTATTATA29648363CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29666433-29666452
ACCGTATTACCTCAAATCGTGTGTATTATA29666433CTTTGGCATCTTTCCCGAGGATTACTCAATTAGTCGCGGGAGATTAATTT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29678701-29678720
ACCGTATTACCTCAAATCGTGTGTATTATA29678701CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27957223-27957242
ACCGTATTACCTCAAATCGTGTGTGTTGTA27957223CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29581278-29581297
ACCGTATTACCTCAAATCGTGTGTATTATA29581278CTTTGGCATCTTTCCCGAGGATTACTCAGTTAATTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29624774-29624793
ACCGTATTACCTCAAATCGTGTGTATTATA29624774CTTTGGCATCTTTCCCGAGGATTACTCAATTAGTCGGGGGAGATTAATTC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29654563-29654582
ACCGAATCACCTCAAATCATGTGTCTTATA29654563CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGACTAGTTC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29659455-29659474
ACCGTATTACCTCAAATCGTGTGTATTATA29659455CTTTGGCATCTTTCCCGAGGATTACTCAATTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29235359-29235378
ACCGTATCACCTCAAATCATGTGTCTTATA29235359CTTTGGCATCTTTCCCGAGGACCACTCAATTAGTTGCGTGAGACTAGCTC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29250486-29250505
GCCGTATTACCTCAAATCGTGTGTATTATA29250486CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29268535-29268554
ACCGTATCACCTCAAATCATGTGTCTTATA29268535CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGACTAGCTC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29277972-29277991
ACCGTATTACCTCAAATCGTGTGTATTATA29277972CTTTGGCATCTTTCCCGAGGATTACTCAGTTAATTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29292973-29292992
TCCGTATCACCTCAAATTGTGTGTCATATA29292973CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGGTTAGTTC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:27963905-27963924
ACCGTATCACCTCAAATCATGTGTCTTATA27963905CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGACTAGCTC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:28004151-28004170
TCCGTATCACCTCAAATTGTGTGTCTTATA28004151CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGGTTAGTTC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:28010233-28010252
GCCGTATTACCTCAAATCGTGTGTATTATA28010233CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:28020620-28020639
ACCGTATTACCTCAAATCTTGTGTATTATA28020620CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:31034173-31034192
CTACCATGTCACCTCAAATCATGTCCTATA31034173CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGATTTATTC
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25948953-25948972
ACCGTATCACCTCAAATCATGTGTCTTATA25948953CTTTGGCATCTTTCCCGAGGACCACTCAATTAGTTGCGTGAGACTAGCTC
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25964108-25964127
GCCGTATTACCTCAAATCGTGTGTATTATA25964108CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25977885-25977904
ACCGTATCACCTCAAATCATGTGTCTTATA25977885CTTTGGCATCTTTCCCGAGGACCACTCAATTAGTTGCGTGAGACTAGCTC
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:26008351-26008370
CTTCCGTATCACCTCAAATTGTGTCTTATA26008351CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGGTTAGTTC
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:26073091-26073110
ACCGTATTACCTCAAATCGTGTGTATTATA26073091CTTTGGCATCTTTCCCGAGGATTACTCAATTAGTTGCATAAGATTAGTTC
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:26154573-26154592
ACCGTATTACCTCAAATCGTGTGTATTATA26154573CTTTGGCATCTTTCCCGAGGATTACTCGGTTAGTTGCATAAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:25983348-25983367
ACCGTATCACCTCAAATCATGTGTCTTATA25983348CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGACTAGCTC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26001835-26001854
ACCGTATTACCTCAAATCGTGTGTGTTGTA26001835CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26004416-26004435
ACCGTATCACCTCAAATCATCTGTCTTGTA26004416CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26029234-26029253
ACCGTATTACCTCAAATCGTGTATGTTATA26029234CTTTGGCATCTTTCCCGAGGATTACTCAATTAGTTGTCAGAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26056336-26056355
ACCGTATTACCTCAAATCGTGTGTATTATA26056336CTTTGGCATCTTTCCCGAGGATCACTCAGTTAGTTGCATAAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26068804-26068823
ACCGTATCACCTCAAATCATGTGTCTTATA26068804CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGACTAGCTC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26136706-26136725
TCCGTATCACCTCAAATTGTGTGTCATATA26136706CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGGTTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29754534-29754553
ACCGTATCACCTCAAATCATGTGTCTTATA29754534CTTTGGCATCTTTCCCGAGGACCACTCAATTAGTTGCGTGAGACTAGCTC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29769689-29769708
GCCGTATTACCTCAAATCGTGTGTATTATA29769689CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29783466-29783485
ACCGTATCACCTCAAATCATGTGTCTTATA29783466CTTTGGCATCTTTCCCGAGGACCACTCAATTAGTTGCGTGAGACTAGCTC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29813932-29813951
CTTCCGTATCACCTCAAATTGTGTCTTATA29813932CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGGTTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29878672-29878691
ACCGTATTACCTCAAATCGTGTGTATTATA29878672CTTTGGCATCTTTCCCGAGGATTACTCAATTAGTTGCATAAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29960165-29960184
ACCGTATTACCTCAAATCGTGTGTATTATA29960165CTTTGGCATCTTTCCCGAGGATTACTCGGTTAGTTGCATAAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU744953.1:29157752-29157771
ACCGTATCACCTCAAATCATGTGTCTTATA29157752CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGACTAGCTC
Malus domestica genome assembly, chromosome: 1.
OU744953.1:29178705-29178724
GCCGTATTACCTCAAATCGTGTGTATTATA29178705CTTTGGCATCTTTCCCGAGGATTACTCAATTGATTGCGAGAGATTAATTT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:29193349-29193368
ACCGTATTACCTCAAATCGTGTGTATTATA29193349CTTTGGCATCTTTCCCGAGGATTACTCAATTGATTGTGAGAGATTAATTC
Malus domestica genome assembly, chromosome: 1.
OU744953.1:29215962-29215981
TCCGTATCACCTCAAATTATGTGTCTTATA29215962CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGGTTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU744953.1:29299194-29299213
ACCGTATTACCTCAAATCGTGTGTATTATA29299194CTTTGGCATCTTTCCCGAGGATTACTCGGTTAGTTGCATAAGATTAGTTT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26228202-26228221
ACCGTATCACCTCAAATCATGTGTCTTATA26228202CTTTGGCATCTTTCCCGAGGACCACTCAATTAGTTGCGTGAGACTAGCTC
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26243363-26243382
GCCGTATTACCTCAAATCGTGTGTATTATA26243363CTTTGGCATCTTTCCCGAGGATTACTCAGTTAGTTGCATAAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26257140-26257159
ACCGTATCACCTCAAATCATGTGTCTTATA26257140CTTTGGCATCTTTCCCGAGGACCACTCAATTAGTTGCGTGAGACTAGCTC
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26287606-26287625
CTTCCGTATCACCTCAAATTGTGTCTTATA26287606CTTTGGCATCTTTCCCGAGGACTACTCAATTAGTTGCATAAGGTTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26352346-26352365
ACCGTATTACCTCAAATCGTGTGTATTATA26352346CTTTGGCATCTTTCCCGAGGATTACTCAATTAGTTGCATAAGATTAGTTC
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26433838-26433857
ACCGTATTACCTCAAATCGTGTGTATTATA26433838CTTTGGCATCTTTCCCGAGGATTACTCGGTTAGTTGCATAAGATTAGTTC
Marinithermus hydrothermalis DSM 14884, complete genome.
CP002630.1:408170-408189
TGCGATTCGGGCGTTACGAGAGGGGTTGGC408170CTTTGGCATCTTTCCCGAGGGGGCGCGGACGCGCACGGGACGCTTGCAAC
Meiothermus taiwanensis WR-220 chromosome, complete genome.
CP021130.1:131693-131712
CGCCATCCGCGTGCTCAAAAACGGCATGGC131693CTTTGGCATCTTTCCCGAGGGACGGCGCAGCCGCACCGGCTTTATCGAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTTGGCATCTTTCCCGAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTTGGCATCTTTCCCGAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.168 | 0.160 | search_plus_done; http://172.18.8.135:50400/match?q=CTTTGGCATCTTTCCCGAGG&k=0&no_gap=0&offset=0&limit=50
0.224 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCGGGAAAGATGCCAAAG&k=0&no_gap=0&offset=0&limit=0
0.224 | 0.000 | cgi_end;

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