GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 15:40:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

60-L026093.SEQ Pigeonpea genomic pBluescript library Cajanus cajan genomic 3', genomic survey sequence.
CZ445521.1:249-268
CTTGACAGGGCGGTGCTCTGACCAATTGAA249CTACAATCCCAGGGAAAAGGGTGTATAGCATACACATTTTTACGGTATCT
VUL106E19.F VUL Phaseolus vulgaris genomic 5', genomic survey sequence.
JY951278.1:797-816
CTTGACAGGGCGGTGCTCTGACCAATTGAA797CTACAATCCCAGGGAAAAGGGGTGTACTGTATAAATATT
Vatairea macrocarpa voucher D.Cardoso 2615 (HUEFS) trnD-trnY intergenic spacer, partial sequence; tRNA-Tyr (trnY) gene, trnY-trnE intergenic spacer, and tRNA-Glu (trnE) gene, complete sequence; and tr
JX187937.1:13-32
TACCAATTGGAA13CTACAATCCCAGGGAAAAGGGCGTACAGCATACATATTCTTACGATTTCA
Vatairea paraensis voucher L.P. de Queiroz 13039 (HUEFS) trnD-trnY intergenic spacer, partial sequence; tRNA-Tyr (trnY) gene, trnY-trnE intergenic spacer, and tRNA-Glu (trnE) gene, complete sequence;
JX187943.1:12-31
ACCAATTGGAA12CTACAATCCCAGGGAAAAGGGCGTACAGCATACATATTCTTACGATTTCA
Trifolium boissieri chloroplast, complete genome.
KJ788284.1:83078-83097
CTTGACAGGGCGGTGCTCTGACCAATTGAA83078CTACAATCCCAGGGAAAAGGTCGTATAGCATACATATTCTTACCAAACTC
Euchresta japonica voucher NA-seedling plastid, complete genome.
MN709835.1:38945-38964
CTTGACAGGGCGGTGCTCTGACCAATTGAA38945CTACAATCCCAGGGAAAAGGTGTATAACATACATATTCTTAGGATTTCCC
Corokia cotoneaster voucher CHR655097 chloroplast, partial genome.
MT385072.1:11444-11463
CTTGACAGGGCGGTGCTCTGACCAATTGAA11444CTACAATCCCAGGGAAAAGGGAAATAAGNNNNNNNNNNNNNNNNNNNNNN
Corokia buddleioides chloroplast, partial genome.
MW194049.1:11477-11496
CTTGACAGGGCGGTGCTCTGACCAATTGAA11477CTACAATCCCAGGGAAAAGGGAAATTAGNNNNNNNNNNNNNNNNNNNNNN
Corokia carpodetoides chloroplast, partial genome.
MW194050.1:11429-11448
CTTGACAGGGCGGTGCTCTGACCAATTGAA11429CTACAATCCCAGGGAAAAGGGAAATAAGGGNNNNNNNNNNNNNNNNNNNN
Corokia collenettei chloroplast, partial genome.
MW194051.1:11500-11519
CTTGACAGGGCGGTGCTCTGACCAATTGAA11500CTACAATCCCAGGGAAAAGGGAAATWAGNNNNNNNNNNNNNNNNNNNNNN
Corokia macrocarpa chloroplast, partial genome.
MW194052.1:11465-11484
CTTGACAGGGCGGTGCTCTGACCAATTGAA11465CTACAATCCCAGGGAAAAGGGAAATTAGNNNNNNNNNNNNNNNNNNNNNN
Corokia whiteana chloroplast, partial genome.
MW194053.1:11466-11485
CTTGACAGGGCGGTGCTCTGACCAATTGAA11466CTACAATCCCAGGGAAAAGGGAAATAAGGNNNNNNNNNNNNNNNNNNNNN
Argophyllum latifolium voucher NOU105550 chloroplast, partial genome.
MW255586.1:11450-11469
CTTGACAGGGCGGTGCTCTGACCAATTGAA11450CTACAATCCCAGGGAAAAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNN
Argophyllum lejourdanii voucher CBG9613283 chloroplast, partial genome.
MW255587.1:11459-11478
CTTGACAGGGCGGTGCTCTGACCAATTGAA11459CTACAATCCCAGGGAAAAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNN
Argophyllum nullumense voucher CBG9613427 chloroplast, partial genome.
MW255589.1:11423-11442
CTTGACAGGGCGGTGCTCTGACCAATTGAA11423CTACAATCCCAGGGAAAAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNN
Corokia buddleioides voucher CHR312440 chloroplast, partial genome.
MW255590.1:11481-11500
CTTGACAGGGCGGTGCTCTGACCAATTGAA11481CTACAATCCCAGGGAAAAGGGAAATTANNNNNNNNNNNNNNNNNNNNNNN
Corokia cotoneaster voucher CHR497632 chloroplast, partial genome.
MW255591.1:11447-11466
CTTGACAGGGCGGTGCTCTGACCAATTGAA11447CTACAATCCCAGGGAAAAGGGAAATWAGNNNNNNNNNNNNNNNNNNNNNN
UNVERIFIED: Scaphopetalum longepedunculatum chloroplast sequence.
MZ901904.1:31509-31528
CTTGACAGGGCGGTGCTCTGACCAATTGAA31509CTACAATCCCAGGGAAAAGGGAAATAAAGAAAAGTGTACAGCATAGATAT
UNVERIFIED: Dalbergia stipulacea chloroplast sequence.
ON881589.1:30902-30921
CTTGACAGGGCGGTGCTCTGACCAATTGAA30902CTACAATCCCAGGGAAAAGGGCGTACAGCATAGATATTCTTATGATTTCA
UNVERIFIED: Dalbergia pinnata chloroplast sequence.
ON881595.1:31030-31049
CTTGACAGGGCGGTGCTCTGACCAATTGAA31030CTACAATCCCAGGGAAAAGGGCGTACAGCATAGATATTCTTATGATTTCA
UNVERIFIED: Dalbergia cultrata chloroplast sequence.
ON881618.1:31068-31087
CTTGACAGGGCGGTGCTCTGACCAATTGAA31068CTACAATCCCAGGGAAAAGGGCGTACAGCATAGATATTCTTATGATTTCA
UNVERIFIED: Dalbergia obtusifolia chloroplast sequence.
ON881814.1:30981-31000
CTTGACAGGGCGGTGCTCTGACCAATTGAA30981CTACAATCCCAGGGAAAAGGGGCGTACAGCATAGATATTCTTATGATTTC
UNVERIFIED: Dalbergia mimosoides chloroplast sequence.
ON881830.1:31095-31114
CTTGACAGGGCGGTGCTCTGACCAATTGAA31095CTACAATCCCAGGGAAAAGGGCGTACAGCATAGATATTCTTATGATTTCA
UNVERIFIED: Dalbergia assamica chloroplast sequence.
ON881833.1:30893-30912
CTTGACAGGGCGGTGCTCTGACCAATTGAA30893CTACAATCCCAGGGAAAAGGGCGTACAGCATAGATATTCTTATGATTTCA
UNVERIFIED: Dalbergia rimosa chloroplast sequence, sequence.
OP581100.1:30897-30916
CTTGACAGGGCGGTGCTCTGACCAATTGAA30897CTACAATCCCAGGGAAAAGGGCGTACAGCATAGATATTCTTATGATTTCA
Euchresta japonica chloroplast, complete genome.
OR665534.1:38916-38935
CTTGACAGGGCGGTGCTCTGACCAATTGAA38916CTACAATCCCAGGGAAAAGGTGTATAACATACATATTCTTAGGATTTCCC
Sequence 9947 from patent US 7420044.
GC572094.1:193-212
AATGACCCCCTTTCCCAAGGGCAACTTTTT193CCTTTTCCCTGGGATTGTAGTGAATAATTCCAAGATTCCAGTAGACCTAA
TSA: Cajanus cajan cultivar Asha contig06498.Asha mRNA sequence.
EZ654362.1:30-49
GATACCGTAAAAATGTGTATGCTATACAC30CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Cajanus scarabaeoides chloroplast, complete genome.
KU729878.1:31030-31049
AGATACCGTAAAAATGTGTATGCTATACAC31030CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Cajanus cajan chloroplast, complete genome.
KU729879.1:31031-31050
AGATACCGTAAAAATGTGTATGCTATACAC31031CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Cajanus cajan chloroplast, complete genome.
KX672004.1:31772-31791
AGATACCGTAAAAATGTGTATGCTATACAC31772CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia odorifera isolate Y801 chloroplast, complete genome.
MF668133.1:31530-31549
TGAAATCATAAGAATATCTATGCTGTACGC31530CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia hainanensis chloroplast, complete genome.
MF926268.1:31558-31577
TGAAATCATAAGAATATCTATGCTGTACGC31558CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Pterocarpus santalinus chloroplast, complete genome.
MH033830.1:32327-32346
TGAAATCATAAGAATATCTATGCTGTACGC32327CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Pterocarpus indicus chloroplast, complete genome.
MH033831.1:31815-31834
TGAAATCATAAGAATATCTATGCTGTACGC31815CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia cultrata chloroplast, complete genome.
MK599253.2:31377-31396
TGAAATCATAAGAATATCTATGCTGTACGC31377CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia tonkinensis voucher KRIB 0077649 chloroplast, complete genome.
MK599470.1:31518-31537
TGAAATCATAAGAATATCTATGCTGTACGC31518CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia tonkinensis voucher scbg4 isolate A chloroplast, complete genome.
MN202179.1:31519-31538
TGAAATCATAAGAATATCTATGCTGTACGC31519CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia odorifera voucher scbg1 isolate A chloroplast, complete genome.
MN202180.1:31558-31577
TGAAATCATAAGAATATCTATGCTGTACGC31558CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia odorifera voucher zhucj062 isolate E chloroplast, complete genome.
MN202181.1:31518-31537
TGAAATCATAAGAATATCTATGCTGTACGC31518CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia tonkinensis voucher NZ1600 isolate E chloroplast, complete genome.
MN202182.1:31520-31539
TGAAATCATAAGAATATCTATGCTGTACGC31520CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia yunnanensis voucher NZ1601 isolate E chloroplast, complete genome.
MN202183.1:31488-31507
TGAAATCATAAGAATATCTATGCTGTACGC31488CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia yunnanensis voucher NZ1602 isolate E chloroplast, partial genome.
MN202184.1:31615-31634
TGAAATCATAAGAATATCTATGCTGTACGC31615CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia tonkinensis isolate K186 chloroplast, complete genome.
MN251241.1:31520-31539
TGAAATCATAAGAATATCTATGCTGTACGC31520CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia sissoo isolate K179 chloroplast, complete genome.
MN251242.1:31805-31824
TGAAATCATAAGAATATCTATGCTGTACGC31805CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia oliveri isolate K185 chloroplast, complete genome.
MN251243.1:31809-31828
TGAAATCATAAGAATATCTATGCTGTACGC31809CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia odorifera isolate K183 chloroplast, complete genome.
MN251244.1:31530-31549
TGAAATCATAAGAATATCTATGCTGTACGC31530CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia hupeana isolate K190 chloroplast, complete genome.
MN251245.1:31824-31843
TGAAATCATAAGAATATCTATGCTGTACGC31824CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia hainanensis isolate K180 chloroplast, complete genome.
MN251246.1:31597-31616
TGAAATCATAAGAATATCTATGCTGTACGC31597CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia cochinchinensis isolate K178 chloroplast, complete genome.
MN251247.1:31810-31829
TGAAATCATAAGAATATCTATGCTGTACGC31810CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia bariensis isolate K184 chloroplast, complete genome.
MN251248.1:31569-31588
TGAAATCATAAGAATATCTATGCTGTACGC31569CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Dalbergia balansae isolate K181 chloroplast, complete genome.
MN251249.1:31505-31524
TGAAATCATAAGAATATCTATGCTATACGC31505CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Pterocarpus santalinus isolate K182 chloroplast, complete genome.
MN251250.1:32328-32347
TGAAATCATAAGAATATCTATGCTGTACGC32328CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Daniellia ogea voucher 774-University_of_Ibadan_Herbarium plastid, complete genome.
MN709828.1:70506-70525
ATGAAATGGTAAGAATATGTACGCTCTACG70506CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCGCCGCCCTGTCAAG
Zornia diphylla voucher Yi15538-KUN plastid, complete genome.
MN709887.1:32111-32130
CGTAATAATAATAATAGAGACGCTGTATGC32111CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG
Flemingia stricta chloroplast, complete genome.
PP230165.1:31449-31468
AGAAACTGTAAAAATGTGTATGCTATACAC31449CCTTTTCCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/Ctacaatcccagggaaaagg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : Ctacaatcccagggaaaagg | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.457 | 0.448 | search_plus_done; http://172.18.8.135:50400/match?q=CTACAATCCCAGGGAAAAGG&k=0&no_gap=0&offset=0&limit=50
0.633 | 0.177 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTTTCCCTGGGATTGTAG&k=0&no_gap=0&offset=0&limit=24
0.653 | 0.019 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).