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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:59:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

vsubiol_003022_96561.1_c3023 vsubiol_000001_96561.1 Dioscorea alata cDNA, mRNA sequence.
HO853643.1:663-682
CACCCATTGTCCCAGAGGCATCACCACCTC663CATAGAAGGTGGCATGAGCATTGGTCCAGCTCTGTTCATAGCCATGAACA
TSA: Lactuca sativa Letassy_X1_5723 mRNA sequence.
JI590555.1:930-949
CCCCCATTGTTCCAGAAGCATCACTGCCAC930CATAGAAGGTGGCATGAGCACTGGTCCAGCCTGAAGCAGTAAAAGCATGG
TSA: Phalaenopsis aphrodite PATC154314 mRNA sequence.
JI647690.1:759-778
CGCCCATTGTGCCTGATGCATCACTCCCTC759CATAGAAGGTGGCATGAGCATCGCTCCAGCCTTCTCCTACCCCATACGCA
TSA: Sesamum indicum cultivar Zhongzhi 11 Unigene24349 mRNA sequence.
JL346074.1:221-240
TACCCATTGTTCCAGATGCATCACCTCCTC221CATAGAAGGTGGCATGAGCATTAATCCAACCTCCATAATAGCCATATGCA
TSA: Oncidium Gower Ramsey contig13719.OnGoRa mRNA sequence.
JL914728.1:388-407
CACCCATAGTGCCAGAAGCATCACTCCCTC388CATAGAAGGTGGCATGAGCAGCTGACCAGCCTTCTCCTTGCCCGTATCCT
TSA: Camellia sinensis tea_rep_c3183 mRNA sequence.
KA282607.1:1145-1164
CTCCCATAGTCCCAGAGGCATCACCCCCAC1145CATAGAAGGTGGCATGAGCATTGATCCAACCTCCATACCCATGAACAAAG
TSA: Camellia sinensis tea_rep_c3899 mRNA sequence.
KA283318.1:1563-1582
CCCCCATTGTGCCGGAAGCATCACCTCCTC1563CATAGAAGGTGGCATGAGCATTAGTCCAACCCAAATAATACCCATCAACA
CHO_OF235xo23r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET927992.1:230-249
TACCCATTGTGCCTGATGCATCACCCCCTC230CATAGAAGGTGGCATGAGCATTTTTCCAGCCTCCATAATCAGCAAAAGTT
CHO_OF4686xj03f1.ab1 CHO_OF4 Nicotiana tabacum genomic 5', genomic survey sequence.
FH359438.1:11-30
TCACCCCCTC11CATAGAAGGTGGCATGAGCATTTTTCCAGCCTCCATAATCAGCAAAAGTT
CHO_OF5006xf23r1.ab1 CHO_OF5 Nicotiana tabacum genomic 3', genomic survey sequence.
FH663579.1:477-496
TACCCATTGTGCCTGATGCATCACCCCCTC477CATAGAAGGTGGCATGAGCATTTTTCCAGCCTCCATAATCAGCAAAAAGT
1061064062404_TF POTATO-F-02-40KB Solanum phureja genomic clone 1061064062404, genomic survey sequence.
GS564015.1:619-638
TACCCATTGTACAAGAAGCATCACTCCCTC619CATAGAAGGTGGCATGAGCACTTTGCCAGCCTCCATAATAGGCGAAATCC
GC_Bc141G18.R GC_Bc Glycine canescens genomic 3', genomic survey sequence.
JS095067.1:861-880
TACCCATTGTCCCAGATGCATCACTCCCTC861CATAGAAGGTGGCATGAGCATTAGTCCCCCCTCCACCATAGGCATGAGCA
Vitis vinifera contig VV78X272246.11, whole genome shotgun sequence.
AM482589.2:8326-8345
TACCCATTGTCCCCGAAGCATCACCCCCGC8326CATAGAAGGTGGCATGAGCATTGATCCATCCTTGACCATGAACACTTGAC
Gossypioides kirkii chromosome KI_05.
CP032247.1:28982446-28982465
TACCCATTGTTCCTGAAGCATCACTTCCAC28982446CATAGAAGGTGGCATGAGCAATGATCCAACCACCATCATATCCATGACCA
Vitis rotundifolia cultivar Noble chromosome 1.
CP092926.1:11376806-11376825
TACCCATTGTCCCAGAAGCATCGCCCCCAC11376806CATAGAAGGTGGCATGAGCATTGATCCATCCTTGACCATGAACACTTGAC
Vitis rotundifolia cultivar Noble chromosome 14.
CP092939.1:25277048-25277067
CACCCATTGTCCCAGAAGCATCACCACCTC25277048CATAGAAGGTGGCATGAGCATTAATCCAACCACCATAATACCCATTCACA
Daucus carota isolate Kuroda chromosome 2.
CP125302.1:1895177-1895196
TACCCATAGTGCCAGAAGCGTCACTGCCGC1895177CATAGAAGGTGGCATGAGCAGACTACAATGTGCCTCAACTAAAAGTTAAA
Vitis vinifera cultivar Pinot Noir 40024 chromosome 1.
CP126648.1:12586736-12586755
TACCCATTGTCCCAGAAGCATCACCCCCAC12586736CATAGAAGGTGGCATGAGCATTGATCCATCCTTGACCATGAACACTTGAC
Vitis vinifera cultivar Pinot Noir 40024 chromosome 14.
CP126661.1:29858173-29858192
CACCCATTGTCCCAGAAGCATCACCACCTC29858173CATAGAAGGTGGCATGAGCATTAATCCAACCACCATAATACCCATTCACA
Vitis vinifera cultivar Pinot Noir 40024 chromosome 17.
CP126664.1:19576729-19576748
TACCCATTGTCCCCGAAGCATCACCCCCGC19576729CATAGAAGGTGGCATGAGCATTGATCCATCCTTGACCATGAACACTTGAC
Vitis x doaniana cultivar PI 588149 chromosome 1.
CP128317.1:12550846-12550865
TACCCATTGTCCCAGAAGCATCACCCCCAC12550846CATAGAAGGTGGCATGAGCATTGATCCATCCTTGACCATGAACACTTGAC
Vitis x doaniana cultivar PI 588149 chromosome 17.
CP128325.1:20596676-20596695
TACCCATTGTCCCCGAAGCATCACCCCCGC20596676CATAGAAGGTGGCATGAGCATTGATCCATCCTTGACCATGAACACTTGAC
Vitis x doaniana cultivar PI 588149 chromosome 1.
CP128336.1:12325321-12325340
TACCCATTGTCCCAGAAGCATCACCCCCAC12325321CATAGAAGGTGGCATGAGCATTGATCCATCCTTGACCATGAACACTTGAC
Vitis x doaniana cultivar PI 588149 chromosome 14.
CP128341.1:29516233-29516252
CACCCATTGTCCCAGAAGCATCACCACCTC29516233CATAGAAGGTGGCATGAGCATTAATCCAACCACCATAATACCCATTCACA
Camelina sativa cultivar CO46 chromosome 4.
CP131553.1:2532989-2533008
TACCCATTGTTCCTGAAGCATCACTTCCAC2532989CATAGAAGGTGGCATGAGCATTGACCCATCCAGCGTCATAGCCATGAACA
Camelina sativa cultivar CO46 chromosome 9.
CP131558.1:2222205-2222224
TACCCATTGTTCCTGAAGCATCACTTCCAC2222205CATAGAAGGTGGCATGAGCATTGACCCATCCAGCGTCATAGCCACGAACA
Ziziphus jujuba cultivar Dongzao chromosome 11.
CP134461.1:7702180-7702199
AGTTTGTACCAAATGTTCCAGAGCCGCCAT7702180CATAGAAGGTGGCATGAGCATTCTTCCAGGGACCAGCATGGAACTTTGGA
Cucumis melo isolate PI 511890 chromosome 7.
CP136106.1:18816360-18816379
TACGCATAGTGTCGGAACCGGACATGTCGC18816360CATAGAAGGTGGCATGAGCATCATACCATGTGGTATCAATGGAGTGAATG
Warburgia ugandensis isolate CL-2023a chromosome 10.
CP141135.1:74276714-74276733
TACCCATCGTTCCAGAGGCATCACCCCCTC74276714CATAGAAGGTGGCATGAGCACTAGACCACCCACCATAGCCATTCACAGAC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:25277572-25277591
TACCCATAGTTCCAGAGGCATCACTGCCGC25277572CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:36465533-36465552
TACCCATAGTTCCAGAGGCATCACTGCCGC36465533CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:25647554-25647573
TACCCATAGTTCCAGAGGCATCACTGCCGC25647554CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:24131454-24131473
TACCCATAGTTCCAGAGGCATCACTGCCGC24131454CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:25552046-25552065
TACCCATAGTTCCAGAGGCATCACTGCCGC25552046CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:25296886-25296905
TACCCATAGTTCCAGAGGCATCACTGCCGC25296886CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:24289467-24289486
TACCCATAGTTCCAGAGGCATCACTGCCGC24289467CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Vitis vinifera cv. PN40024, annotated scaffold_108.assembly12x.
FN595239.1:811941-811960
CACCCATTGTCCCAGAAGCATCACCACCTC811941CATAGAAGGTGGCATGAGCATTAATCCAACCACCATAATACCCATTCACA
Vitis vinifera cv. PN40024, annotated scaffold_53.assembly12x.
FN596258.1:2543968-2543987
TACCCATTGTCCCCGAAGCATCACCCCCGC2543968CATAGAAGGTGGCATGAGCATTGATCCATCCTTGACCATGAACACTTGAC
Cucumis melo genomic scaffold, anchoredscaffold00027.
LN681873.1:19703-19722
TACGCATAGTGTCGGAACCGGACATGTCGC19703CATAGAAGGTGGCATGAGCATCATACCATGTGGTATCAATGGAGTGAATG
Cucumis melo genomic chromosome, chr_7.
LN713261.1:18302782-18302801
TACGCATAGTGTCGGAACCGGACATGTCGC18302782CATAGAAGGTGGCATGAGCATCATACCATGTGGTATCAATGGAGTGAATG
Lumnitzera littorea microsatellite LL-379 sequence.
MT274029.1:1084-1103
CACCCATTGTTCCTGTTGCGTCGCCACCGC1084CATAGAAGGTGGCATGAGCACTCTCCCATCCACCATTGCCACCATAAGTG
Chrysanthemum makinoi genome assembly, chromosome: 1.
OU343217.1:254978201-254978220
TACCCATTGTACCGGACGCATCTTGACCTC254978201CATAGAAGGTGGCATGAGCATTAGACCATGAACCACCTTTGGCACTAGCT
Fraxinus pennsylvanica genome assembly, chromosome: 21.
OU503056.1:21882761-21882780
TACCCATTGTTCCAGAGGCATCACTTCCAC21882761CATAGAAGGTGGCATGAGCATTGATCCATCCTCCACCATAGCCATGAACA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:21938505-21938524
TACCCATAGTTCCAGAGGCATCACTGCCGC21938505CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus domestica genome assembly, chromosome: 1.
OU696677.1:21976693-21976712
TACCCATAGTTCCAGAGGCATCACTGCCGC21976693CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:25741074-25741093
TACCCATAGTTCCAGAGGCATCACTGCCGC25741074CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus domestica genome assembly, chromosome: 1.
OU744953.1:25007016-25007035
TACCCATAGTTCCAGAGGCATCACTGCCGC25007016CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Malus domestica genome assembly, chromosome: 1.
OU744991.1:22237082-22237101
TACCCATAGTTCCAGAGGCATCACTGCCGC22237082CATAGAAGGTGGCATGAGCATCCTGCCACGCTCCGCCAGTGTAAACACCA
Luzula sylvatica genome assembly, chromosome: 5.
OX326960.1:58952424-58952443
TACCCATTGTGCCTGAAGCATCACCGCCGC58952424CATAGAAGGTGGCATGAGCACTGACCCATCCTCCAATGGGTCCTGAAGCA
Chamaenerion angustifolium genome assembly, chromosome: 3.
OX328267.1:24694659-24694678
TACCCATTGTCCCGGAGGCATCGCTGCCTC24694659CATAGAAGGTGGCATGAGCATCGGACCACCCACTTCCGGCTCCATTCACC
Scutellaria galericulata genome assembly, chromosome: 1.
OX335784.1:25646279-25646298
TACCCATTGTTCCAGAGGCGTCACTTCCCC25646279CATAGAAGGTGGCATGAGCATTGGTCCAACCACCACCATAGCTATGAACA
Scutellaria galericulata genome assembly, chromosome: 3.
OX335786.1:21945511-21945530
TACCATTAGTGCCGGAGGCATCGCCACCAC21945511CATAGAAGGTGGCATGAGCATTTTGCCAACCTCCATAAGCAGCCATAGCA
Ballota nigra genome assembly, chromosome: 6.
OX344725.1:52374382-52374401
TACCCATTGTTCCAGAAGCATCACTTCCTC52374382CATAGAAGGTGGCATGAGCATTAGTCCAACCGCCGCCATAGCCATCAGCA
Hedera helix genome assembly, chromosome: 6.
OX359269.1:44390486-44390505
TACCCATTGTCCCAGAAGCATCACCTCCTC44390486CATAGAAGGTGGCATGAGCATTTATCCAACCCCTGCCATAATACCCATCA
Hedera helix genome assembly, chromosome: 12.
OX359275.1:10499600-10499619
TACCCATTGTCCCAGAGGCATCACCCCCAC10499600CATAGAAGGTGGCATGAGCATTGGTCCAACCTCCACCACTGTACCCATGA
Linaria vulgaris genome assembly, chromosome: 2.
OX415250.1:15204389-15204408
TACCCATTGTTCCAGATGCATCACCTCCAC15204389CATAGAAGGTGGCATGAGCATTAATCCAACCTCCATAATATCCATATGCA
Sambucus nigra genome assembly, chromosome: 3.
OX422209.1:572404609-572404628
TACCCATTGTGCCTGAAGCATCAGCCCCTC572404609CATAGAAGGTGGCATGAGCATCAACCCATCCATCTTCATAACCTTGAACA
Sambucus nigra genome assembly, chromosome: 9.
OX422215.1:188346973-188346992
TACCCATTGTCCCAGAGGCATCACCACCAC188346973CATAGAAGGTGGCATGAGCATTAACCCACCCTCCACCACCACCATACCCA
Lactuca saligna genome assembly, chromosome: 9.
OX465085.1:37245628-37245647
TACCCATTGTTCCAGAAGCATCACTGCCAC37245628CATAGAAGGTGGCATGAGCACTGGTCCAGCCTGAAGCAGTAAAAGCATGG
Ilex aquifolium genome assembly, chromosome: 7.
OX637397.1:33450415-33450434
TACCCATTGTGCCGGAGGCATCACCACCTC33450415CATAGAAGGTGGCATGAGCATTGACCCATCCTCCACCATAGGCTTGAACA
Scutellaria minor genome assembly, chromosome: 1.
OX940725.1:11456042-11456061
TACCATTAGTGCCGGAGGCATCGCCACCAC11456042CATAGAAGGTGGCATGAGCATTTTGCCAACCTCCATAAGCAGCCATAGCA
Scutellaria minor genome assembly, chromosome: 2.
OX940726.1:27148505-27148524
TACCCATTGTTCCAGAGGCGTCACTTCCGC27148505CATAGAAGGTGGCATGAGCATTGGTCCAACCACCACCATAGCCATGAACA
Arctium minus genome assembly, chromosome: 2.
OX941081.1:26711246-26711265
TACCCATAGTGCCGGAAGCATCACCAGCTC26711246CATAGAAGGTGGCATGAGCATCCACCCAACCTTCATTGTAGCCTTGAACC
Arctium minus genome assembly, chromosome: 13.
OX941092.1:5129376-5129395
TACCCATTGTTCCTGAGGCATCACCACCAC5129376CATAGAAGGTGGCATGAGCATTGCTCCATGGTGTTATATAGTAACCATTA
Agrostemma githago genome assembly, chromosome: 15.
OY288253.1:16829224-16829243
CACCCATTGTGCCGGAGGCATCACTCCCAC16829224CATAGAAGGTGGCATGAGCACCTTGCCATCCTCCATAATCCGCTAAACCG
Inga leiocalycina genome assembly, chromosome: 13.
OY725332.1:12209373-12209392
TACCCATTGTGCCTGAAGCATCACCACCTC12209373CATAGAAGGTGGCATGAGCATCAACCCACCCTCCACCATAGCCATGAGCA
Ligustrum vulgare genome assembly, chromosome: 1.
OY743168.1:96313073-96313092
TACCCATTGTTCCCGAAGCGTCGCCGCCTC96313073CATAGAAGGTGGCATGAGCATTAATCCAACCACCATAGTAGCAATATACA
Ligustrum vulgare genome assembly, chromosome: 3.
OY743170.1:54466305-54466324
TACCCATTGTGCCAGAGGCATCACTACCAC54466305CATAGAAGGTGGCATGAGCATTAATCCACCCTCCATAACCATGAACAGAT
Berberis vulgaris genome assembly, chromosome: 4.
OY747127.1:9792004-9792023
TACCCATGGTGGCAGATGCAGTCTCATCGC9792004CATAGAAGGTGGCATGAGCAAGGGACCATCGACTTGATTGGAAACGAACA
Berberis vulgaris genome assembly, chromosome: 13.
OY747136.1:62514887-62514906
TACCCATGGTTGCAGATGCAGTTTCATCAC62514887CATAGAAGGTGGCATGAGCAAGGGACCATCGACTTGGCTGGAAACGAACC
Umbilicus rupestris genome assembly, chromosome: 3.
OY787607.1:15727046-15727065
TACCCATGGTGCCAGATGCGTCCCCACCGC15727046CATAGAAGGTGGCATGAGCATCAGTCCATCCTCCGCCATACCCATCAACA
Cruciata laevipes genome assembly, chromosome: 7.
OY787638.1:5202060-5202079
CACCCATTGTTTCAGAGGCTGACTCATCTC5202060CATAGAAGGTGGCATGAGCAAGCTGCCATGGAGTAGGCTGGAAAACTGGT
Primula veris genome assembly, chromosome: 1.
OY821740.1:40046801-40046820
CACCTTTAGTTTCGGAACCATCGGCCTCAC40046801CATAGAAGGTGGCATGAGCATTCTTCCAAGGCCCAGGCTGAAAAGGGGGC
Triglochin maritima genome assembly, chromosome: 7.
OY821776.1:4402260-4402279
TACCCATAGTGCCAGAGGCATCACCACCAC4402260CATAGAAGGTGGCATGAGCAATGGACCAACCACCATAGGCGTGGACAGTG
Calendula officinalis genome assembly, chromosome: 1.
OY970820.1:17001244-17001263
TACCCATTGTACCGGAAGCATCACCGCCAC17001244CATAGAAGGTGGCATGAGCATTAGTCCATTGGCCACCACCTTTGCCATTA
Chalcosyrphus nemorum genome assembly, chromosome: 3.
OX454334.1:12688087-12688106
CAAGTAAATTAATATCAGGACTGCTACCCT12688087CATAGAAGGTGGCATGAGCACATTGCATTAGAAGTTAACTGCATAGGGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/FCATAGAAGGTGGCATGAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : FCATAGAAGGTGGCATGAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.469 | 0.460 | search_plus_done; http://172.18.8.135:50400/match?q=CATAGAAGGTGGCATGAGCA&k=0&no_gap=0&offset=0&limit=50
0.535 | 0.066 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTCATGCCACCTTCTATG&k=0&no_gap=0&offset=0&limit=0
0.535 | 0.000 | cgi_end;

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