GGGenome | Results

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2025-04-09 18:18:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Populus balsamifera subsp. trichocarpa teosinte-branched-like protein (TB1) gene, complete cds.
AF309092.1:2236-2257

ATGACAAAACTTTATCCTCCAAAAAAAAAA2236GAAAAAACCTATCAGCTAAATTAATTAACTGCAG

Populus nigra genome assembly, chromosome: 10.
OX637681.1:9114387-9114408

TGGCAAAAATTTGTCCTCCAAAAAAAAAAA9114387GAAAAAACCTATCAGCTAAATTAATTAACTGCAGAATTTGACAATGCCAAGA

ORNL094 Poplar BAC Library Populus trichocarpa genomic similar to Transcription factor, genomic survey sequence.
BH860620.1:656-677

TCTTGGCATTGTCAAATTCTGCAGTTAATT656AATTTAGCTGATAGGTTTTTTCTTTTTTTTTTGGAGGATAAAGTTTTGTCAT

Populus trichocarpa clone Pop1-16J18, complete sequence.
AC149481.1:68219-68240

TCTTGGCATTGTCAAATTCTGCAGTTAATT68219AATTTAGCTGATAGGTTTTTTCTTTTTTTTTTGGAGGATAAAGTTTTGTCAT

Populus trichocarpa clone Pop1-12C14, complete sequence.
AC149541.1:70086-70107

TCTTGGCATTGTCAAATTCTGCAGTTAATT70086AATTTAGCTGATAGGTTTTTTCTTTTTTTTTTGGAGGATAAAGTTTTGTCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.102 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=GAAAAAACCTATCAGCTAAATT&k=0&no_gap=0&offset=0&limit=50
0.133 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=AATTTAGCTGATAGGTTTTTTC&k=0&no_gap=0&offset=0&limit=48
0.135 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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