GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 15:11:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES05M13, 5' end sequence.
FY384282.1:16-35
GCACAAGCGAGAGTA16GAAAACACAACAACGGGCTTTTTTTTTTCCACTAAAAAAAACTCCCCTCT
Dianthus caryophyllus mRNA, clone: CFES03B09, 5' end sequence.
FY394959.1:11-30
GGCGAGAGTA11GAAAACACAACAACGGGCTTTTTTTTTCCGCTAAAAAAACTCCCCTCTGC
Dianthus caryophyllus mRNA, clone: CFES03G18, 5' end sequence.
FY395087.1:10-29
GCGAGAGTA10GAAAACACAACAACGGGCTTTTTTTTTTCCGCTAAAAAAACTCCCCTCTG
Dianthus caryophyllus mRNA, clone: CFES11I09, 5' end sequence.
FY398147.1:3-22
GA3GAAAACACAACAACGGGCTTTTTTTTTTTCCACTAAAAAAAACTCCCCTC
Dianthus caryophyllus mRNA, clone: CFES11I11, 5' end sequence.
FY398149.1:3-22
GA3GAAAACACAACAACGGGCTTTTTTTTTTTCCACTAAAAAAAACTCCCCTC
Dianthus caryophyllus mRNA, clone: CFES23P17, 5' end sequence.
FY402808.1:16-35
GCACAAGCGAGAGTA16GAAAACACAACAACGGGCTTTTTTTTTTCCGCTAAAAAAACTCCCCTCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAAACACAACAACGGGCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAAACACAACAACGGGCTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.545 | 0.537 | search_plus_done; http://172.18.8.135:50400/match?q=GAAAACACAACAACGGGCTT&k=0&no_gap=0&offset=0&limit=50
0.562 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=AAGCCCGTTGTTGTGTTTTC&k=0&no_gap=0&offset=0&limit=44
0.562 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).