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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:42:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Felis catus Senzu DNA, chromosome: B4, American Shorthair breed.
AP023158.1:14508374-14508393
ATAAAAGTATCTTGTGGCTGCGAAGAAAAA14508374GAAACATGGTAATGAGGATAGAGGGTGACAAAATCATACTATTATCCTAA
RTWW3_4_A12.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_4_A12_A022 5', mRNA sequence.
CF476942.1:330-349
ACCGGGCAATCAGGCGGTTATTTTGCGGAA330GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
RTCNT1_16_B08.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_16_B08_A029 5', mRNA sequence.
CF665520.1:312-331
ACCGGGCAATCAGGCGGTTATTTTGCGGAA312GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGATATGG
HEAT1_52_B10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_52_B10_A029 3', mRNA sequence.
DR014855.1:68-87
ACCGGGCAATCAGGCGGTTATTTTGCGGAA68GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGATATGG
HEAT1_52_B10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_52_B10_A029 5', mRNA sequence.
DR014937.1:349-368
ACCGGGCAATCAGGCGGTTATTTTGCGGAA349GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGATATGG
STRR1_35_G05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_35_G05_A033 3', mRNA sequence.
DR097532.1:38-57
ACCGGGCAATCAGGCGGTTATTTTGCGGAA38GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
STRR1_35_G05.g4_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_35_G05_A033 5', mRNA sequence.
DR097603.1:279-298
ACCGGGCAATCAGGCGGTTATTTTGCGGAA279GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
RTPHOS1_16_B05.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone RTPHOS1_16_B05_A029 5', mRNA sequence.
DR167078.1:295-314
ACCGGGCAATCAGGCGGTTATTTTGCGGAA295GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
RTHG1_29_C11.b1_A029 Roots plus added mercury Pinus taeda cDNA clone RTHG1_29_C11_A029 3', mRNA sequence.
DR388572.1:38-57
ACCGGGCAATCAGGCGGTTATTTTGCGGAA38GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
EST1073961 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAAM44 3' end, mRNA sequence.
DR683885.1:373-392
ACCGGGCAATCAGGCGGTTATTTTGCGGAA373GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
EST1074555 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAAT15 3' end, mRNA sequence.
DR684478.1:374-393
ACCGGGCAATCAGGCGGTTATTTTGCGGAA374GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
EST1146713 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFC62 3' end, mRNA sequence.
DT631782.1:381-400
ACCGGGCAATCAGGCGGTTATTTTGCGGAA381GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
PCO011.C21_F04 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO011_F04 5', mRNA sequence.
GT241924.1:376-395
ACCGGGCAATCAGGCGGTTATTTTGCGGAA376GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
PCO011.CR_F04 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO011_F04 3', mRNA sequence.
GT242287.1:54-73
ACCGGGCAATCAGGCGGTTATTTTGCGGAA54GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
PCO018.C21_L16 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO018_L16 5', mRNA sequence.
GT251813.1:378-397
ACCGGGCAATCGGGCGGTTATTTTGCGGAA378GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
PCO018.CR_L16 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO018_L16 3', mRNA sequence.
GT252173.1:5-24
GGAA5GAAACATGGTAATGAGGATATAAAAAGTCGAAGTTATGCCAGGGGACATG
PBA0119.C21_A10 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0119_A10 5', mRNA sequence.
GW750672.1:438-457
ACCGGGCAATCAGGCGGTTATTTTGCGGAA438GAAACATGGTAATGAGGATATAAAAGTCGAAGTTATGCCAGGGGACATGG
Mythimna ferrago genome assembly, chromosome: 27.
OU342700.1:15210081-15210100
ATGCATAAAGTCAAAGTACTTTATTTGCCA15210081GAAACATGGTAATGAGGATATTGAATTCAGTACATAAGTTCTACATGGTT
Phorcus lineatus genome assembly, chromosome: 4.
OV121084.1:13676783-13676802
ATCAATACATGATTGTTACATAATCCAGTA13676783GAAACATGGTAATGAGGATAACATTTTGGTTGATTTAGATTTTACAACTA
Mythimna lalbum genome assembly, chromosome: 24.
OX439369.1:9245124-9245143
TGTCAAAATCAAAGTTTACTTTATTTGCCA9245124GAAACATGGTAATGAGGATATTGAATACAGTGCTGTACTAGAAACCGATA
Leucania comma genome assembly, chromosome: W.
OY282462.1:18954483-18954502
TAAACACTGGTATAACTGCGATGTTTGCCA18954483GAAACATGGTAATGAGGATATTGAAAACAGTAATAAGTTTCACATGATTC
Leucania comma genome assembly, chromosome: 6.
OY282468.1:13656855-13656874
TCCGTCAAAGTCAAAGTACTTTATTTGCCA13656855GAAACATGGTAATGAGGATATTGAAAACAGTAATAAGTTTCACATGATTC
Leucania comma genome assembly, chromosome: 10.
OY282472.1:24729266-24729285
AAAGTCAAAGTCAAAGTACTTTATTTGCCA24729266GAAACATGGTAATGAGGATATTGAAAACAGTAATAAGTTTCACATGATTC
Leucania comma genome assembly, chromosome: 18.
OY282480.1:1739531-1739550
AAAGTCAAAGTCAAAGTACTTTATTTGCCA1739531GAAACATGGTAATGAGGATATTGAGAACAGTAATAAGTTTCACATGATTC
Leucania comma genome assembly, chromosome: 23.
OY282485.1:18796488-18796507
GGTGTCAAAGTCAAAGTACTTTATTTGCCA18796488GAAACATGGTAATGAGGATATTGAAAACAGTAATAAGTTTCACATGATTC
Leucania comma genome assembly, chromosome: 28.
OY282490.1:4982275-4982294
GGAGTCAAAGTCAAAGTACTTTATTTGCCA4982275GAAACATGGTAATGAGGATATTGAAAACAGTAATAAGTTTCACATGATTC
RTCNT1_53_C11.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_53_C11_A029 3', mRNA sequence.
CF670865.1:367-386
CCATGTCCCCTGGCATAACTTCGACTTTTA367TATCCTCATTACCATGTTTCTTCCGCAAAATAACCGCCTGATTGCCCGGT
RTS1_2_H09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_2_H09_A029 3', mRNA sequence.
DR109493.1:273-292
CCATGTCCCCTGGCATAACTTCGACTTTTA273TATCCTCATTACCATGTTTCTTCCGCAAAATAACCGCCTGATTGCCCGGT
RTS1_2_H10.b1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_2_H10_A029 3', mRNA sequence.
DR109494.1:448-467
CCATGTCCCCTGGCATAACTTCGACTTTTA448TATCCTCATTACCATGTTTCTTCCGCAAAATAACCGCCTGATTGCCCGGT
PBA0119.CR_A10 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0119_A10 3', mRNA sequence.
GW751042.1:770-789
CCATGTCCCCTGGCATAACTTCGACTTTTA770TATCCTCATTACCATGTTTCTTCCGCAAAATAACCGCCTGATTGCCCGGT
Mythimna impura genome assembly, chromosome: 8.
LR990347.1:28515909-28515928
AAACATGTAGAACTTATGTATTGTATTCAA28515909TATCCTCATTACCATGTTTCTGGCAAATAAAATACTTTGACTTTGACTTT
Mythimna impura genome assembly, chromosome: 12.
LR990351.1:9837440-9837459
AAACATGTAGAACTTATTTACTGTATTCAA9837440TATCCTCATTACCATGTTTCTGGCAAATAAAATACTTTGACTTTGACTTT
Mythimna impura genome assembly, chromosome: 13.
LR990352.1:2110275-2110294
AAACATGTAGAACTTATGTACTGTATTCAA2110275TATCCTCATTACCATGTTTCTGGCAAATAAAATACTTTGACTTTTTGACT
Mythimna impura genome assembly, chromosome: 29.
LR990368.1:4537855-4537874
AAACATGTAGAACTTATGTACTGTATTCAA4537855TATCCTCATTACCATGTTTCTGGCAAATAAAATACTTTGACTTTGACTTT
Mythimna ferrago genome assembly, chromosome: 23.
OU342696.1:7538591-7538610
CTGGTAAATCTATACATACAATAGATTTAA7538591TATCCTCATTACCATGTTTCTAGCAAATAAAGAACTTTGACATCGATAAG
Phorcus lineatus genome assembly, chromosome: 1.
OV121081.1:34593923-34593942
TAGATGTAAAATTTAAATAAAAAATAATGT34593923TATCCTCATTACCATGTTTCAACTGGGTTATGTTACAATCATGACTGTAC
Phorcus lineatus genome assembly, chromosome: 18.
OV121098.1:25340165-25340184
TTCTTGTCAAAACCATATTAAGCAAAATGT25340165TATCCTCATTACCATGTTTCCAACCGGTCAAATGTTACTATAATGTACTG
Mythimna lalbum genome assembly, chromosome: 7.
OX439351.1:22360420-22360439
AAACAAGTAGAACTTATGTACTGTATTCAA22360420TATCCTCATTACCATGTTTCTGGAAAATACTTTGACTTTTATTTTTAGAA
Mythimna lalbum genome assembly, chromosome: 23.
OX439367.1:17474447-17474466
GCACTCTCCACACACGTAAGCGTCGCGTGT17474447TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGACTTTAACGTG
Leucania comma genome assembly, chromosome: W.
OY282462.1:26784329-26784348
GAATCATGTGAAACTTATTACTGTTTTCAA26784329TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGACTTTGACTTT
Leucania comma genome assembly, chromosome: W.
OY282462.1:30909476-30909495
GAATCATGTGAAACTTATTACTGTTTTCAA30909476TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGACTTTGACTTT
Leucania comma genome assembly, chromosome: 2.
OY282464.1:1475130-1475149
ATTATGTGAAACTTATTACTCTGTTTTCAA1475130TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGACTTTGACTTT
Leucania comma genome assembly, chromosome: 8.
OY282470.1:22248743-22248762
GAATCATGTGAAACTTATTACTGTTTTCAA22248743TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGACTTTTACTAA
Leucania comma genome assembly, chromosome: 10.
OY282472.1:6719692-6719711
GAATCATGTGAAACTTATTACTGTTTTCAA6719692TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGACTTTGACTTT
Leucania comma genome assembly, chromosome: 14.
OY282476.1:7838225-7838244
GAATCATGTGAAACTTATTACTGTTTTCAA7838225TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGATTTTGACTTT
Leucania comma genome assembly, chromosome: 21.
OY282483.1:554822-554841
GAATCATGTGAAACTTATTACTGTTTTCAA554822TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGACTTTGACTTT
Leucania comma genome assembly, chromosome: 23.
OY282485.1:12771885-12771904
ATTAGTGACACTATAAACATAGATAAATAA12771885TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGACTTTGACTTT
Leucania comma genome assembly, chromosome: 25.
OY282487.1:9613640-9613659
GAATCATGTGAAACTTATTACTGTTTTCAA9613640TATCCTCATTACCATGTTTCTGGCAAATAAAGTACTTTGACTTTGACTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAACATGGTAATGAGGATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAACATGGTAATGAGGATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.456 | 1.447 | search_plus_done; http://172.18.8.135:50400/match?q=GAAACATGGTAATGAGGATA&k=0&no_gap=0&offset=0&limit=50
1.920 | 0.464 | search_minus_done; http://172.18.8.135:50400/match?q=TATCCTCATTACCATGTTTC&k=0&no_gap=0&offset=0&limit=24
1.934 | 0.015 | cgi_end;

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