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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:01:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS1C518JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX892363.1:757-776
GAATATATCATCCATCTGTTCGATTCCTTC757GAAACCGTGAAGCGAAGAAGCGCCGTAGAAAGCCTTTGATCTCTTGG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_5194.
FX663849.1:737-756
GAATATATCATCCATCTGTTCGATTCCTTC737GAAACCGTGAAGCGAAGAAGCGCCGTAGAAAGCCTTTGATCTCTTGGACT
TSA: Raphanus sativus RS13427 mRNA sequence.
JT797974.1:770-789
GAATATATCATCCATCTGTTCGATTCCTTC770GAAACCGTGAAGCGAAGAAGCGCCGTAGAAAGCCTTTGATCTCTTGGACT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:41994438-41994457
GAATATATCATCCATCTGTTCGATTCCTTC41994438GAAACCGTGAAGCGAAGAAGCGCCGTAGAAAGCTTTTGATCTCTTGGACT
RS1BZ19TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX887900.1:188-207
AGTCCAAGAGATCAAAGGCTTTCTACGGCG188CTTCTTCGCTTCACGGTTTCGAAGGAATCGAACAGATGGATGATATATTC
RS1C518TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX888430.1:367-386
AGTCCAAGAGATCAAAGGCTTTCTACGGCG367CTTCTTCGCTTCACGGTTTCGAAGGAATCGAACAGATGGATGATATATTC
Raphanus sativus mRNA, clone: RSCL02E20, 5' end sequence.
FY433604.1:322-341
AGTCCAAGAGATCAAAGGCTTTCTACGGCG322CTTCTTCGCTTCACGGTTTCGAAGGAATCGAACAGATGGATGATATATTC
Raphanus sativus mRNA, clone: RSCL04L23, 5' end sequence.
FY434439.1:291-310
AGTCCAAGAGATCAAAGGCTTTCTACGGCG291CTTCTTCGCTTCACGGTTTCGAAGGAATCGAACAGATGGATGATATATTC
Raphanus sativus mRNA, clone: RSCS12J06, 5' end sequence.
FY450217.1:344-363
AGTCCAAGAGATCAAAGGCTTTCTACGGCG344CTTCTTCGCTTCACGGTTTCGAAGGAATCGAACAGATGGATGATATATTC
Raphanus sativus mRNA, clone: RSCS23C13, 5' end sequence.
FY454000.1:433-452
AGTCCAAGAGATCAAAGGCTTTCTACGGCG433CTTCTTCGCTTCACGGTTTCGAAGGAATCGAACAGATGGATGATATATTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8106.
FX792387.1:379-398
AGTCCAAGAGATCAAAAGCTTTCTACGGCG379CTTCTTCGCTTCACGGTTTCGAAGGAATCGAACAGATGGATGATATATTC
Raphanus sativus cultivar WK10039 clone RsH013G06, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC255326.1:32591-32610
AGTCCAAGAGATCAAAAGCTTTCTACGGCG32591CTTCTTCGCTTCACGGTTTCGAAGGAATCGAACAGATGGATGATATATTC
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:2038512-2038531
AGTCCAAGAGATCAAAAGCTTTCTACGGCG2038512CTTCTTCGCTTCACGGTTTCGAAGGAATCGAACAGATGGATGATATATTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAAACCGTGAAGCGAAGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAACCGTGAAGCGAAGAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.310 | 0.301 | search_plus_done; http://172.18.8.135:50400/match?q=GAAACCGTGAAGCGAAGAAG&k=0&no_gap=0&offset=0&limit=50
0.907 | 0.597 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCTTCGCTTCACGGTTTC&k=0&no_gap=0&offset=0&limit=46
0.913 | 0.006 | cgi_end;

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