GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:09:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Micromys minutus genome assembly, chromosome: X.
OZ004781.1:106286121-106286140
GTTCTAGTAAAACAAAAAGGGGGAGATGTG106286121GAAAGCCAGGATAGCATTCGCACACTGTACGTTCCATGTAAACAAAATAT
Rattus norvegicus DNA, BAC clone: RNB1-011O15, 3'end.
DH516135.1:451-470
ACGGCGCTGGCTTCTGCTGCGCCCCACGTG451GAAAGCCAGGATAGCATTCGCCATTACAAGAGGGCGCTGGCTTCCGCTGC
Rattus norvegicus clone CH230-6H20, WORKING DRAFT SEQUENCE, 11 unordered pieces.
AC094955.4:173045-173064
ATGGCGATGGCTTCCACTGCACCCCACGTG173045GAAAGCCAGGATAGCATTCGCCATTACAAGATGGTGCTGGGGGCTGGGGA
Rattus norvegicus clone CH230-41O2, WORKING DRAFT SEQUENCE, 13 unordered pieces.
AC111712.3:137215-137234
ATGGCGATGGCTTCCACTGCACCCCACGTG137215GAAAGCCAGGATAGCATTCGCCATTACAAGATGGTGCTGGGGGCTGGGGA
Rattus norvegicus clone CH230-279E15, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC111836.4:102012-102031
ATGGTGCTGGCTTCTGCTGTGCCCCACGTG102012GAAAGCCAGGATAGCATTCGCCATTACAAGATGGCACTGGCTTCCGCTGC
Rattus norvegicus clone CH230-279E15, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC111836.4:107042-107061
ATGGTGCTGGCTTCCGCTGCGCCCCACGTG107042GAAAGCCAGGATAGCATTCGCCATTACAAGATGGCACTGGCTTCCGCTGC
Rattus norvegicus clone CH230-80A3, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC112287.4:83267-83286
ATGGCGCTGGCTTCCACTGTGCCCCACATG83267GAAAGCCAGGATAGCATTCGCCATTACAAGATGGCACTGGCTTCCGCCGC
Rattus norvegicus clone CH230-301K18, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC121655.4:57065-57084
ACGGCGCTGGCTTCTGCTGCGCCCCACGTG57065GAAAGCCAGGATAGCATTCGCCATTACAAGAGGGCGCTGGCTTCCGCTGC
Poecilobothrus nobilitatus genome assembly, chromosome: 1.
OX352772.1:47936516-47936535
TGCGGAGGCAGATGTCAGTAACAGACTGAA47936516GAAAGCCAGGATAGCATTCGGACGATTGTACCCAGTTTAGAGGAACAAAC
Rattus norvegicus DNA, BAC clone: RNB1-418M10, 3'end.
DH816554.1:447-466
GCAGCGGAAGCCAGCGCCCTCTTGTAATGG447CGAATGCTATCCTGGCTTTCCACGTGGGGCGCAGCAGAAGCCAGCGCCGT
Rattus norvegicus DNA, BAC clone: RNB2-336L24, 3' end.
FT147584.1:447-466
GCAGCGGAAGCCAGCGCCCTCTTGTAATGG447CGAATGCTATCCTGGCTTTCCACGTGGGGCGCAGCAGAAGCCAGCGCCGT
Rattus norvegicus clone CH230-108C17, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC094072.6:125340-125359
GCAGCGGAAGCCAGCGCCATCTTGTAATGG125340CGAATGCTATCCTGGCTTTCCACGTGGGGCGCAGCGGAAGCTAGCGCCAT
Rattus norvegicus clone CH230-148F16, WORKING DRAFT SEQUENCE, 11 unordered pieces.
AC096318.6:53185-53204
GTGGTGGAAGCCAGCGCCATCTTGTAATGG53185CGAATGCTATCCTGGCTTTCCACGTGGGGCGCAGCAGAACCCAGCGCCAT
Rattus norvegicus clone CH230-126G9, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC108238.5:188854-188873
GCAGCGGAAGCCAGCGCCATCTTGTAATGG188854CGAATGCTATCCTGGCTTTCCACGTGGGGCGCAGCGGAAGCCAGCGCCAT
Rattus norvegicus clone CH230-202K7, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC111452.5:85541-85560
GTGGTGGAAGCCAGCGCCATCTTGTAATGG85541CGAATGCTATCCTGGCTTTCCACGTGGGGCGCAGCAGAACCCAGCGCCAT
Rattus norvegicus clone CH230-138E12, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC114137.5:46845-46864
GCAGCGGAAGCCAGCGCCCTCTTGTAATGG46845CGAATGCTATCCTGGCTTTCCACGTGGGGCGCAGCAGAAGCCAGCGCCGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAAGCCAGGATAGCATTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAAGCCAGGATAGCATTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.118 | 0.109 | search_plus_done; http://172.18.8.135:50400/match?q=GAAAGCCAGGATAGCATTCG&k=0&no_gap=0&offset=0&limit=50
0.192 | 0.074 | search_minus_done; http://172.18.8.135:50400/match?q=CGAATGCTATCCTGGCTTTC&k=0&no_gap=0&offset=0&limit=41
0.197 | 0.005 | cgi_end;

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