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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:22:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:2568898-2568917
CTGGAGTTCGATTTTGTCCTTAGAAAGCGA2568898GAAAGGGGTTGCCATAACTCCTGCATTGTTACTTATGATAAAACAAGTAC
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:2856299-2856318
CTGAAGTTCGATTTTGTCCTTAGAAAGCAA2856299GAAAGGGGTTGCCATAACTCCTGCATTGTTACTTATGATAAAACAAGTAC
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:2215546-2215565
CTGAAGTTCGATTTTGTCCTTAGAAAGCAA2215546GAAAGGGGTTGCCATAACTCCTGCATTGTTACTTCATGATAAAACAAGTA
020813AARA008562HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA008562, mRNA sequence.
CN875994.1:364-383
TTCCTCTCAACATCCTAATTAACAATGCAG364GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
Mdfrt3038e21.y1 Mdfrt Malus domestica cDNA clone Mdfrt3038e21 5' similar to TR:O81739 O81739 HYPOTHETICAL 31.8 KD PROTEIN, mRNA sequence.
CO540841.1:238-257
TTCCTCTCAACATCCTAATTAACAATGCAG238GAGTTATGGCAACCCCTTTCTCGCTTTCTAAGGACAAAATCGAACTCCAG
Mdlv3_4036h08.y1 Mdlv3 Malus domestica cDNA clone Mdlv3_4036h08 5' similar to TR:O81739 O81739 HYPOTHETICAL 31.8 KD PROTEIN, mRNA sequence.
CV987188.1:349-368
TTCCTCTCAACATCCTAATTAACAATGCAG349GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
020905AARA014063HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA014063, mRNA sequence.
EB123982.1:311-330
TTCCTCTCAACATCCTAATTAACAATGCAG311GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
010922AVBC202052PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC202052, mRNA sequence.
EB129381.1:368-387
TTCCTCTCAACATCCTAATTAACAATGCAG368GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
011001AVBC212033PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC212033, mRNA sequence.
EB129908.1:370-389
TTCCTCTCAACATCCTAATTAACAATGCAG370GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
020802AVBC011123HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC011123, mRNA sequence.
EB131561.1:347-366
TTCCTCTCAACATCCTAATTAACAATGCAG347GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
020808AVBC013497HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC013497, mRNA sequence.
EB132337.1:347-366
TTCCTCTCAACATCCTAATTAACAATGCAG347GAGTTATGGCAACCCCTTTCTTGCTTT
TSA: Pyrus x bretschneideri Unigene86416_XinShao mRNA sequence.
JR670314.1:219-238
TTCCTCTCAACATCCTAATTAACAATGCAG219GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTTCAG
Fragaria x ananassa cultivar Benihoppe chromosome 20.
CP139756.1:3062007-3062026
CAAAAGAAAAAGAAAGAAAAAAAGAAAAAA3062007GAGTTATGGCAACCCCTTTCCTGGAAACAGATAACTGAATTCTGGAAAAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:41704178-41704197
GTACTTGTTTTATCATAAGTAACAATGCAG41704178GAGTTATGGCAACCCCTTTCTCGCTTTCTAAGGACAAAATCGAACTCCAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:31183527-31183546
TACTTGTTTTATCATTAAGTAACAATGCAG31183527GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:29419719-29419738
GTACTTGTTTTATCATAAGTAACAATGCAG29419719GAGTTATGGCAACCCCTTTCTCGCTTTCTAAGGACAAAATCGAACTCCAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:31173672-31173691
GTACTTGTTTTATCATAAGTAACAATGCAG31173672GAGTTATGGCAACCCCTTTCTCGCTTTCTAAGGACAAAATCGAACTCCAG
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:30782712-30782731
TACTTGTTTTATCATTAAGTAACAATGCAG30782712GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:29338083-29338102
GTACTTGTTTTATCATAAGTAACAATGCAG29338083GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:27591304-27591323
TACTTGTTTTATCATTAAGTAACAATGCAG27591304GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
Malus domestica genome assembly, chromosome: 1.
OU696677.1:27606809-27606828
TACTTGTTTTATCATTAAGTAACAATGCAG27606809GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
Malus domestica genome assembly, chromosome: 1.
OU744542.1:31353463-31353482
TACTTGTTTTATCATTAAGTAACAATGCAG31353463GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
Malus domestica genome assembly, chromosome: 1.
OU744953.1:30949848-30949867
TACTTGTTTTATCATTAAGTAACAATGCAG30949848GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
Malus domestica genome assembly, chromosome: 1.
OU744991.1:27881200-27881219
TACTTGTTTTATCATTAAGTAACAATGCAG27881200GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:35663733-35663752
ATACTTGTCTTTTCATAAGTAACAATGCAG35663733GAGTTATGGCAACCCCTTTCATGCTTTCAAAGGACAAGATCGAACTTCAG
Furcula furcula genome assembly, chromosome: Z.
OU452242.1:37433427-37433446
ATTACCTACCACCTATACAGCGATCCCAAA37433427GAGTTATGGCAACCCCTTTCTTCAAATGATTAGGCTTTTGTTCTGCAGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAAAGGGGTTGCCATAACTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAAGGGGTTGCCATAACTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.175 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=GAAAGGGGTTGCCATAACTC&k=0&no_gap=0&offset=0&limit=50
0.617 | 0.442 | search_minus_done; http://172.18.8.135:50400/match?q=GAGTTATGGCAACCCCTTTC&k=0&no_gap=0&offset=0&limit=47
0.632 | 0.015 | cgi_end;

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