GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 09:11:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Larimichthys crocea genome assembly, chromosome: X.
LT972176.1:5564365-5564385
CCCAAAACACATACAGCACAAAGGCTCATA5564365GAAATGCAAATGTGGAGAGAGATGGTGGAGTGATGGGCAGCCAGCCAGAGC
Trifolium fragiferum genome assembly, chromosome: 3.
OX940791.1:21232217-21232237
ATGGAACACTTTCTTGACACTAACTTCTCC21232217GAAATGCAAATGTGGAGAGAGAAATGAAGTTGTTGCACTGTCTGCTTTCCT
Sequence 6303 from patent US 10006042.
MI851030.1:778-798
AGGAAAGCAGACAGTGCCACAACCTCATTT778CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Sequence 6304 from patent US 10006042.
MI851031.1:1129-1149
AGGAAAGCAGACAGTGCCACAACCTCATTT1129CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Sequence 6303 from patent US 10337023.
MO174197.1:778-798
AGGAAAGCAGACAGTGCCACAACCTCATTT778CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Sequence 6304 from patent US 10337023.
MO174198.1:1129-1149
AGGAAAGCAGACAGTGCCACAACCTCATTT1129CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Sequence 6303 from patent US 10774340.
MV707944.1:778-798
AGGAAAGCAGACAGTGCCACAACCTCATTT778CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Sequence 6304 from patent US 10774340.
MV707945.1:1129-1149
AGGAAAGCAGACAGTGCCACAACCTCATTT1129CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Sequence 6303 from patent US 11499161.
OO875725.1:778-798
AGGAAAGCAGACAGTGCCACAACCTCATTT778CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Sequence 6304 from patent US 11499161.
OO875726.1:1129-1149
AGGAAAGCAGACAGTGCCACAACCTCATTT1129CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
NF054A01DT1F1002 Drought Medicago truncatula cDNA clone NF054A01DT 5', mRNA sequence.
BF633504.1:443-463
AGGAAAGCAGACAGTGCCACAACCTCATTT443CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
s13dNF02H06AT058_322774 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence.
CX523695.1:358-378
AGGAAAGCAGACAGTGCCACAACCTCATTT358CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Medicago truncatula chromosome 2 clone mth2-89f22, complete sequence.
AC174468.2:62742-62762
AGGAAAGCAGACAGTGCCACAACCTCATTT62742CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Medicago truncatula chromosome 5 clone mth2-57p20, COMPLETE SEQUENCE.
CU459035.1:8583-8603
AGGAAAGCAGACAGTGCCACAACCTCATTT8583CTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAAAAAGTATTCCAT
Pemphredon lugubris genome assembly, chromosome: 1.
OW121815.1:757318-757338
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT757318CTCTCTCCACATTTGCATTTCGGCCTAGCGGTCCGACGACTTTTACACGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAATGCAAATGTGGAGAGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAATGCAAATGTGGAGAGAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.095 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=GAAATGCAAATGTGGAGAGAG&k=0&no_gap=0&offset=0&limit=50
0.630 | 0.535 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTCTCCACATTTGCATTTC&k=0&no_gap=0&offset=0&limit=48
0.639 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).