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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 00:33:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Strongylocentrotus purpuratus clone R3-3108M9, WORKING DRAFT SEQUENCE, 16 unordered pieces.
AC168509.2:127436-127455
ATTAGCTCAGCCGGCTAGCGCAGGCGGTAG127436GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCTATCGAATGGAAACC
Strongylocentrotus purpuratus clone R3-3041H15, WORKING DRAFT SEQUENCE, 23 unordered pieces.
AC178437.1:82861-82880
ATTAGCTCATCCGGCTACCGCTGGCGGTAG82861GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCTATCGAATGGAAATC
Strongylocentrotus purpuratus clone R3-23A16, WORKING DRAFT SEQUENCE, 17 unordered pieces.
AC178823.1:24642-24661
ATTAGCTCAGCCGGCTAGCGCAGGCGGTAG24642GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCTATCGAATGGAAACC
Strongylocentrotus purpuratus clone R3-4011N4, WORKING DRAFT SEQUENCE, 21 unordered pieces.
AC179135.1:96891-96910
TTAGCTCAGCCGGCTACCGCCTGGCGGTAG96891GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCGTTCGAATGGAAACC
Strongylocentrotus purpuratus clone R3-1029I3, WORKING DRAFT SEQUENCE, 21 unordered pieces.
AC179587.1:79251-79270
ATTAGCTCAGCCGGCTACCACTGGCGGCAG79251GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCAATCGAATGGAAACC
Strongylocentrotus purpuratus clone R3-3083P17, WORKING DRAFT SEQUENCE, 28 unordered pieces.
AC180707.1:148928-148947
ATTAGCTCATCCGGCTACCGCTGGCGGTAG148928GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCTATCGAATGGAAATC
Strongylocentrotus purpuratus clone R3-3061I15, WORKING DRAFT SEQUENCE, 30 unordered pieces.
AC180932.1:61416-61435
ATTAGCTCAGCCGGCTACCGCTGGCGGTAG61416GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCTTTCGAATGGAAACC
Strongylocentrotus purpuratus clone R3-7F11, WORKING DRAFT SEQUENCE, 11 unordered pieces.
AC181548.1:78827-78846
ATTAGCTCAGCCGGCTAGCGCAGGCGGTAG78827GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCTATCGAATGGAAACC
Strongylocentrotus purpuratus clone R3-1105C18, WORKING DRAFT SEQUENCE, 7 unordered pieces.
AC181628.1:50106-50125
ATTAGCTCAGCCGGCTAGCGCAGGCGGTAG50106GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCTATCGAATGGAAACC
Strongylocentrotus purpuratus clone R3-1021F9, WORKING DRAFT SEQUENCE, 11 unordered pieces.
AC181856.1:3920-3939
TTAGCTCAGCCGGCTACCGCCTGGCGGTAG3920GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCGTTCGAATGGAAACC
Strongylocentrotus purpuratus clone R3-3071E10, WORKING DRAFT SEQUENCE, 20 unordered pieces.
AC201498.1:157923-157942
ATTAGCTCATCCGGCTACCGCTGGCGGTAG157923GAAATGGCATCCAAAAGCATGCGCCGGCTGCCGCCTATC
Geum urbanum genome assembly, chromosome: 11.
OX327007.1:49880635-49880654
GTCTGTGACGTTCGTTGATTGGTCTGAAGG49880635GAAATGGCATCCAAAAGCATTTAGAAATCAGGACATCACCGCTGATCTTC
Chionographis japonica genome assembly, chromosome: 12.
OX393560.1:30292926-30292945
GTCAGTGACACATGTAGATTGGTCTGAAGG30292926GAAATGGCATCCAAAAGCATATCGGGCGCAGGATGTTACTTATGAACTCC
Schistosoma turkestanicum genome assembly, chromosome: 2.
OX103972.1:45301269-45301288
ACACGAACGCTTAATCTACAGACCACTATT45301269GAAATGGCATCCAAAAGCATTAGTGTTTAACTTGAATCATTTTACGATAT
Nematopogon swammerdamellus genome assembly, chromosome: 17.
OX336350.1:13469322-13469341
TAATTAAACTACGAAAAGTTGACAATGCAA13469322GAAATGGCATCCAAAAGCATGAATTTTCGGCGAAACAGCCCCACCCTACC
Tipula vernalis genome assembly, chromosome: 2.
OY282559.1:49858312-49858331
AAGGATATTGTTCCGCTGGACAGGGAAGCA49858312GAAATGGCATCCAAAAGCATTCATATTACACACGACAAAATTCGCTTATC
Strongylocentrotus purpuratus clone R3-3091G18, WORKING DRAFT SEQUENCE, 22 unordered pieces.
AC168551.2:80708-80727
GGTTTCCATTCGAACGGCGGCAGCCGGCGC80708ATGCTTTTGGATGCCATTTCCTACCGCCAGGCGGTAGCCGGCTGAGCTAA
Strongylocentrotus purpuratus clone R3-14D24, WORKING DRAFT SEQUENCE, 13 unordered pieces.
AC172401.3:52100-52119
GGTTTCCATTCGAACGGCGGCAGCCGGCGC52100ATGCTTTTGGATGCCATTTCCTACCGCCAGGCGGTAGCCGGCTGAGCTAA
Strongylocentrotus purpuratus clone R3-1008C3, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.
AC173722.3:33353-33372
GATTTCCATTCGATAGGCGGCAGCCGGCGC33353ATGCTTTTGGATGCCATTTCCTACCGCCAGCGGTAGCCGGATGAGCTAAT
Strongylocentrotus purpuratus clone R3-3001H06, WORKING DRAFT SEQUENCE, 14 unordered pieces.
AC176185.1:22620-22639
GGTTTCCATTCGAACGGCGGCAGCCGGCGC22620ATGCTTTTGGATGCCATTTCCTACCGCCAGGCGGTAGCCGGCTGAGCTAA
Strongylocentrotus purpuratus clone R3-3086M20, WORKING DRAFT SEQUENCE, 20 unordered pieces.
AC178252.1:100938-100957
GGTTTCCATTCGAAAGGCGGCAGCCGGCGC100938ATGCTTTTGGATGCCATTTCCTACCGCCAGCGGTAGCCGGCTGAGCTAAT
Strongylocentrotus purpuratus clone R3-3067P10, WORKING DRAFT SEQUENCE, 15 unordered pieces.
AC180878.1:137683-137702
GGTTTCCATTCGATAGGCGGCAGCCGGCGC137683ATGCTTTTGGATGCCATTTCCTACCGCCTGCGCTAGCCGGCTGAGCTAAT
Strongylocentrotus purpuratus clone R3-1105C18, WORKING DRAFT SEQUENCE, 7 unordered pieces.
AC181628.1:30461-30480
GGTTTCCATTCGAACGGCGGCAGCCGGCGC30461ATGCTTTTGGATGCCATTTCCTACCGCCAGGCGGTAGCCGGCTGAGCTAA
Strongylocentrotus purpuratus clone R3-16L15, WORKING DRAFT SEQUENCE, 6 unordered pieces.
AC184504.1:98761-98780
GATTTCCATTCGATAGGCGGCAGCCGGCGC98761ATGCTTTTGGATGCCATTTCCTACCGCCAGCGGTAGCCGGATGAGCTAAT
Euphorbia lathyris genome assembly, chromosome: 9.
OY755228.1:59138748-59138767
CAAAAAATGGAATTTATATATTTTTCTTTT59138748ATGCTTTTGGATGCCATTTCAAAGTTTAAAGTTCCATATAGTAACTGGTT
Viola odorata genome assembly, chromosome: 8.
OY829544.1:5462208-5462227
TTCAAGCAGAGGAGAAGAGCGGTCGAGGCT5462208ATGCTTTTGGATGCCATTTCACAAATTGTAGTTTTTTTTATATAATTTTT
Orgyia antiqua genome assembly, chromosome: 7.
OU779868.1:25097618-25097637
AGAACACTTTTTCTCAATTTGAGTAAAGAC25097618ATGCTTTTGGATGCCATTTCACAGAAGGTAATTGAATTTATCTTCAGTTT
Fragum fragum genome assembly, chromosome: 11.
OX336375.1:39779360-39779379
TGTATTGCCTTAACCCATTCAAAGACAATG39779360ATGCTTTTGGATGCCATTTCCTGTTCAGTCCCTAGTTTTTACGTCCCTGA
Lumbricus terrestris genome assembly, chromosome: 8.
OX457043.1:8128944-8128963
GACATATTTAACAGAAACAGGCCATCAAGC8128944ATGCTTTTGGATGCCATTTCTGTTTAGCATTTAGAGTCAACTCAGTCAAC
Pyrrhosoma nymphula genome assembly, chromosome: 4.
OY754330.1:80077062-80077081
GCCTTTAAAGCATAAACTGTAGGAATACTG80077062ATGCTTTTGGATGCCATTTCTGGAGCGTATGCGTTGATTATGAAAATTGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAAATGGCATCCAAAAGCAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAATGGCATCCAAAAGCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.330 | 0.321 | search_plus_done; http://172.18.8.135:50400/match?q=GAAATGGCATCCAAAAGCAT&k=0&no_gap=0&offset=0&limit=50
0.451 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=ATGCTTTTGGATGCCATTTC&k=0&no_gap=0&offset=0&limit=34
0.461 | 0.009 | cgi_end;

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