GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:07:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:6815270-6815289
ACCGGTAAAAGAAAACTAAAACCTGAAAAT6815270GAAATGGCTATCGGAGTGACCCTTCATTTACACCTAGTAAAAGTTTTCAT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:27103665-27103684
ACGCAAACTTATACTAGGTGTAGATTAAGG27103665GTCACTCCGATAGCCATTTCATTTTAAGGTTTTAGTTTTCTTTTTCCGGT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:25317675-25317694
ACGCAAACTTTTACTAGGTGTAGATTAAGG25317675GTCACTCCGATAGCCATTTCATTTTAAGGTTATAGTTTTCTTTTACTGGT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:26943580-26943599
ACGCAAACTTATACTAGGTGTAGATTAAGG26943580GTCACTCCGATAGCCATTTCATTTTAAGGTTTTAGTTTTCTTTTTCCGGT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:26710140-26710159
CGCTTTCTCTTCAATAGGTGTAGATTAAGG26710140GTCACTCCGATAGCCATTTCATTTTAGGGTTTTAGTTTTCTTTTACCGGT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:26800226-26800245
ATGAAAACTTTTACTAGGTGTAAATGAAGG26800226GTCACTCCGATAGCCATTTCATTTTCAGGTTTTAGTTTTCTTTTACCGGT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:25363991-25364010
ACGCAAACTTATACTAGGTGTAGATTAAGG25363991GTCACTCCGATAGCCATTTCATTTTAAGGTTTTAGTTTTCTTTTTCCGGT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:23450815-23450834
ATGAAAACTTTTACTAGGTGTAAATGAAGG23450815GTCACTCCGATAGCCATTTCATTTTCAGGTTTTAGTTTTCTTTTACCGGT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:27167220-27167239
ACGCAAACTTATACTAGGTGTAGATTAAGG27167220GTCACTCCGATAGCCATTTCATTTTAAGGTTTTAGTTTTCTTTTTCCGGT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:26533086-26533105
ATGAAAACTTTTACTAGGTGTAAATGAAGG26533086GTCACTCCGATAGCCATTTCATTTTCAGGTTTTAGTTTTCTTTTACCGGT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:23636717-23636736
CGCTTTCTCTTCAATAGGTGTAGATTAAGG23636717GTCACTCCGATAGCCATTTCATTTTAGGGTTTTAGTTTTCTTTTACCGGT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:23726803-23726822
ATGAAAACTTTTACTAGGTGTAAATGAAGG23726803GTCACTCCGATAGCCATTTCATTTTCAGGTTTTAGTTTTCTTTTACCGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAATGGCTATCGGAGTGAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAATGGCTATCGGAGTGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.295 | 0.287 | search_plus_done; http://172.18.8.135:50400/match?q=GAAATGGCTATCGGAGTGAC&k=0&no_gap=0&offset=0&limit=50
0.330 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GTCACTCCGATAGCCATTTC&k=0&no_gap=0&offset=0&limit=49
0.337 | 0.007 | cgi_end;

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