GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:06:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 10.
CP133511.1:16533593-16533612
TTAGACAGAGGTCTGCAGAGCCGGAGGTTG16533593GAAATTTGGCTTTGGGTTCAAATTCCTGGCCAACTTGATGAAGATTTATT
Myripristis murdjan genome assembly, chromosome: 22.
LR597571.1:30038888-30038907
TGCATGAGGCTTGGGGGCTTGGGGACAGTG30038888GAAATTTGGCTTTGGGTTCACAAGTTGGATTTAAAAAAATGCTGGTTAAA
Gadus morhua genome assembly, chromosome: 10.
LR633952.1:18502980-18502999
TTAGACAGAGGTCTGCAGAGCCGGAGGTTG18502980GAAATTTGGCTTTGGGTTCAAATTCCTGGCCAACTTGATGCAGATTTATT
Pollachius pollachius genome assembly, chromosome: 10.
OX465133.1:8337588-8337607
TTAGACAGAGGTCTGCAGAGCCTGAGGTCG8337588GAAATTTGGCTTTGGGTTCAAATTCCTGGCCAACTTGATGTAGGTTTATT
Pollachius pollachius genome assembly, chromosome: 10.
OX465133.1:8343067-8343086
TTAGACAGAGGTCTTCAGAGCCTGAGGTCG8343067GAAATTTGGCTTTGGGTTCAAATTCCTGGCCAACTTGATGTAGGTTTATT
gmnbhkic_0010c08.pDNRm13r Gadus morhua head kidney library (injected with polyriboinosinic polyribocytidylic acid) Gadus morhua cDNA, mRNA sequence.
ES777438.1:306-325
TTAGACAGAGGTCTGCAGAGCCGGAGGTTG306GAAATTTGGCTTTGGGTTCAAATTCCTGGCCAACTTGATGCAGATTTATT
gmnbmd_0004k12.pDNRm13r Gadus morhua digestive tissue library Gadus morhua cDNA, mRNA sequence.
EX176428.1:315-334
TTAGACAGAGGTCTGCAGAGCCGGAGGTTG315GAAATTTGGCTTTGGGTTCAAATTCCTGGCCAACTTGATGCAGATTTATT
gmnbpcic_0003c20.pDNRm13r Gadus morhua pyloric caeca library (injected with polyriboinosinic polyribocytidylic acid) Gadus morhua cDNA, mRNA sequence.
FC073782.1:308-327
TTAGACAGAGGTCTGCAGAGCCGGAGGTTG308GAAATTTGGCTTTGGGTTCAAATTCCTGGCCAACTTGATGCAGATTTATT
gmnbpcic_0012k07.pDNRm13r Gadus morhua pyloric caeca library (injected with polyriboinosinic polyribocytidylic acid) Gadus morhua cDNA, mRNA sequence.
FC074190.1:292-311
TTAGACAAAGGTCTGCAGAGCCGGAGGTTG292GAAATTTGGCTTTGGGTTCAAATTCCTGGCCAACTTGATGCAGATTTATT
gmnbhkas_0014f19.pDNRm13r Gadus morhua head kidney library (injected with formalin-killed Aeromonas salmonicida) Gadus morhua cDNA, mRNA sequence.
FF408960.1:306-325
TTAGACAGAGGTCTGCAGAGCCGGAGGTTG306GAAATTTGGCTTTGGGTTCAAATTCCTGGCCAACTTGATGCAGATTTATT
VBL6_6_D19_E001.g1 Normalized cDNA library from developing embryos of peanut Arachis hypogaea cDNA, mRNA sequence.
GO342274.1:540-559
ATTGATTCAATTCGGAACAAAGTACCGCAA540GAAATTTGGCTTTGGGTTCATAACAAGCACAGACATATTTCTTTCATACC
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:124033073-124033092
ATTGATTCAATTCAGAGCAAAGTACCTCAA124033073GAAATTTGGCTTTGGGTTCATAACAAGCATAGAGATATTTCTTTCGCACC
Arachis hypogaea cultivar Shitouqi chromosome B10.
CP031002.1:21926298-21926317
ATTGACTCAATTCGAACCAAAGTACTACAA21926298GAAATTTGGCTTTGGGTTCATAACAAGTACAGACAAGAGACTATCACACC
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:121826565-121826584
ATTGATTCAATTCAGAGCAAAGTACCTCAA121826565GAAATTTGGCTTTGGGTTCATAACAAGCATAGAGATATTTCTTTCGCACC
Arachis ipaensis cultivar K30076 chromosome 10.
CP049901.1:21915871-21915890
ATTGACTCAATTCGAACCAAAGTACTACAA21915871GAAATTTGGCTTTGGGTTCATAACAAGTACAGACAAGAGACTATCACACC
Sambucus nigra genome assembly, chromosome: 2.
OX422208.1:634647601-634647620
CATTAGTATGGTTCTTTATTTGTTTGTCTT634647601GAAATTTGGCTTTGGGTTCAACTCTGGTCATTTTTTTAAGTCTTTTCGTG
gmnbmd_0004f13.t7 Gadus morhua digestive tissue library Gadus morhua cDNA, mRNA sequence.
EX178086.1:303-322
AATAAATCTGCATCAAGTTGGCCAGGAATT303TGAACCCAAAGCCAAATTTCCAACCTCCGGCTCTGCAGACCTCTGTCTAA
gmnbmd_0004o06.t7 Gadus morhua digestive tissue library Gadus morhua cDNA, mRNA sequence.
EX179116.1:294-313
AATAAATCTGCATCAAGTTGGCCAGGAATT294TGAACCCAAAGCCAAATTTCCAACCTCCGGCTCTGCAGACCTCTGTCTAA
znc_0030_B11 Gadus morhua intestinal library ZNC Gadus morhua cDNA, mRNA sequence.
EX741279.1:300-319
AATAAATCTGCATCAAGTTGGCCAGGAATT300TGAACCCAAAGCCAAATTTCCAACCTCCGGCTCTGCAGACCTCTGTCTAA
znc_0035_C05 Gadus morhua intestinal library ZNC Gadus morhua cDNA, mRNA sequence.
EX741723.1:280-299
AATAAATCTGCATCAAGTTGGCCAGGAATT280TGAACCCAAAGCCAAATTTCCAACCTCCGGCTCTGCAGACCTCTGTCTAA
gmnbhkic_0010c08.pDNRF2 Gadus morhua head kidney library (injected with polyriboinosinic polyribocytidylic acid) Gadus morhua cDNA, mRNA sequence.
FF414153.1:294-313
AATAAATCTGCATCAAGTTGGCCAGGAATT294TGAACCCAAAGCCAAATTTCCAACCTCCGGCTCTGCAGACCTCTGTCTAA
EST_bsai_evw_1261402 bsaievw whole Boreogadus saida cDNA Boreogadus saida cDNA clone bsai_evw_017_184 5', mRNA sequence.
HO077749.1:293-312
AATAAATCTACATCAAGTTGGCCAGGAGTT293TGAACCCAAAGCCAAATTTCCAACCTCCGGCTCTGCAGACCTCTGTCTAA
TSA: Arachis hypogaea CL7485Contig1.Arhy mRNA sequence.
EZ756999.1:382-401
GGTATGAAAGAAATATGTCTGTGCTTGTTA382TGAACCCAAAGCCAAATTTCTTGCGGTACTTTGTTCCGAATTGAATCAAT
TSA: Gadus morhua strain NEAC GmE100215i27978.GamoNEAC, mRNA sequence.
JW185975.1:303-322
AATAAATCTGCATCAAGTTGGCCAGGAATT303TGAACCCAAAGCCAAATTTCCAACCTCCGGCTCTGCAGACCTCTGTCTAA
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:141832327-141832346
GGTATGAAAGAAATATGTCTGTGCTTGTTA141832327TGAACCCAAAGCCAAATTTCTTGCGGTACTTTGTTCCGAATTGAATCAAT
Heliconius sara genome assembly, chromosome: 6.
OU860785.2:8147302-8147321
CCACAAATGTATCGTTGTCAGATTTTTTCC8147302TGAACCCAAAGCCAAATTTCACAATTCTAGGTCAACAGGCAGTAAGTACC
Metellina segmentata genome assembly, chromosome: 6.
OX375878.1:57888121-57888140
TAAATAAACATAGGAATCGTTGAGTCAGTT57888121TGAACCCAAAGCCAAATTTCCCCCCAAAGATGCTAAAAAAACACGAAATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAAATTTGGCTTTGGGTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAATTTGGCTTTGGGTTCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.604 | 0.596 | search_plus_done; http://172.18.8.135:50400/match?q=GAAATTTGGCTTTGGGTTCA&k=0&no_gap=0&offset=0&limit=50
1.198 | 0.594 | search_minus_done; http://172.18.8.135:50400/match?q=TGAACCCAAAGCCAAATTTC&k=0&no_gap=0&offset=0&limit=34
1.205 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).