GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:43:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Spinacia oleracea subsp. turkestanica cultivar PI494751 chromosome Y.
CP130887.1:91818171-91818191
TTAGATATTATTGTGGGCCTAATGCAATTA91818171GAACAGAGAAGCAGTCTAAGCAAAACAGGAAGGCAAAGAAATCTCACTTGA
Fagus sylvatica genome assembly, chromosome: 9.
OU015769.1:14574597-14574617
TGAAATATTTTTGTGGGCCTGATGCTGTTA14574597GAACAGAGAAGCAGTCTAAGCAAAGAAGGAAGAAATGGAAACCTTCAATGT
Parietaria judaica genome assembly, chromosome: 6.
OX940865.1:11174979-11174999
TGAAGTACATGTGTGGGCCCGATGCCTGTA11174979GAACAGAGAAGCAGTCTAAGCAAACAAGGAAAAAAAATTCTAGAGAGAACA
Quercus dentata isolate Qdleaves-2020 chromosome 8.
CP116451.1:36465240-36465260
ACATTGCAGGGCTCCATTTCTTCCTTGCTT36465240GCTTAGACTGCTTCTCTGTTCTAACAGCATCAGGCCCACAAAAATATTTCA
Quercus variabilis isolate HB chromosome 8b.
CP129440.1:30614352-30614372
ACATTGCAGGGCTCCATTTCTTCCTTGCTT30614352GCTTAGACTGCTTCTCTGTTCTAACCGCATCAGGCCCACAAAAATATTTTA
Quercus variabilis isolate HB chromosome 8a.
CP129452.1:31109698-31109718
ACATTGCAGGGCTCCATTTCTTCCTTGCTT31109698GCTTAGACTGCTTCTCTGTTCTAACCGCATCAGGCCCACAAAAATATTTTA
Spinacia oleracea subsp. turkestanica cultivar PI494751 chromosome X.
CP130739.1:97602524-97602544
TCAAGTGAGATTTCTTTGCCTTCCTGTTTT97602524GCTTAGACTGCTTCTCTGTTCTAATTGCATTAGGCCCACAATAATATCTAA
Quercus robur genome assembly, chromosome: 8.
OW028771.1:35496886-35496906
ACATTGCAGGGCTCCATTTCTTCCTTGCTT35496886GCTTAGACTGCTTCTCTGTTCTAACAGCATCAGGCCCACAAAAATATTTCA
Chenopodium album genome assembly, chromosome: 17.
OX419224.1:13348862-13348882
TCCAGTGAAGTTTCTTACCCTTTTTCTCTT13348862GCTTAGACTGCTTCTCTGTTCTTCTTGCATGAGGCCCACAATAATATTTGA
Chenopodium album genome assembly, chromosome: 27.
OX419234.1:8338354-8338374
TCCAGTGAAGTTTTTTACCCTTTTTCTCTT8338354GCTTAGACTGCTTCTCTGTTCTTCTTGCATTAGGCCCACAATAATATTTGA
Parietaria judaica genome assembly, chromosome: 5.
OX940864.1:23059449-23059469
TGTTCTCTCTAGAAAAAAATTTCCTTGTTT23059449GCTTAGACTGCTTCTCTGTTCTACAGGCATCGGGCCCACACATGTACTTCA
Quercus cerris genome assembly, chromosome: 4.
OY770009.1:31793942-31793962
ACATTGCAGGGCTCCATTTCTTCCTTGCTT31793942GCTTAGACTGCTTCTCTGTTCTAACCGCATCAGGCCCACAAAAATATTTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAACAGAGAAGCAGTCTAAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAACAGAGAAGCAGTCTAAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.167 | 0.158 | search_plus_done; http://172.18.8.135:50400/match?q=GAACAGAGAAGCAGTCTAAGC&k=0&no_gap=0&offset=0&limit=50
0.253 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTAGACTGCTTCTCTGTTC&k=0&no_gap=0&offset=0&limit=47
0.259 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).