GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:10:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Cenchrus purpureus cultivar elephant grass chromosome B3.
CP053463.1:38467382-38467400
GATCCTCCATCTCCTTTCCCGACCGAGTTT38467382GAACAGCCTTTGCCATCTCGGGACCTTGGGGCTGCCCCGGTAATCTTCC
Spirometra erinaceieuropaei genome assembly, scaffold: SPER_contig0022836.
LN181495.1:1916-1934
GAGACAAGATGGAGGAAGGGGGGGGGGGAA1916GAACAGCCTTTGCCATCTCAGTTTTTCTTCAATTTTTGCAGGTACTTTT
Noctua fimbriata genome assembly, chromosome: Z.
LR990921.1:1981108-1981126
CTGCAGAAATTCTCTTTCTTACCAGTTCCG1981108GAACAGCCTTTGCCATCTCTGGACCATGTAGATGGAGCGACCCCTTCCG
Salarias fasciatus genome assembly, chromosome: 9.
LR597444.1:9249467-9249485
TTCTGTGACTTCCTTCATGAAGGATTATCT9249467GAGATGGCAAAGGCTGTTCATTTTTAAAGTGGAATTTACATCACAATGC
CGN-45400 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w22b22 5', mRNA sequence.
DV699559.1:771-789
TACAGTCCATCTGTTCAGTACACTCTATAC771GAGATGGCAAAGGCTGTTCTGGGAAGGTTTCATGATTTATCATCAGTTG
CGN-49028 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w25h3 5', mRNA sequence.
DV702616.1:771-789
TACAGTCCATCTGTTCAGTACACTCTATAC771GAGATGGCAAAGGCTGTTCTGGGAAGGTTTCATGATTTATCATCAGTTG
TransId-226117 CACATN1 Coffea arabica cDNA clone CACATN1-8634TVB similar to Urate oxidase - Solanum tuberosum (Potato), mRNA sequence.
GR994605.1:674-692
TACAGTCCATCTGTTCAGTACACTCTATAC674GAGATGGCAAAGGCTGTTCTGGGAAGGTTTCATGATTTATCATCAGTTG
TransId-226116 CACATN1 Coffea arabica cDNA clone CACATN1-8634TV similar to Urate oxidase - Solanum tuberosum (Potato), mRNA sequence.
GR994608.1:599-617
TACAGTCCATCTGTTCAGTACACTCTATAC599GAGATGGCAAAGGCTGTTCTGGGAAGGTTTCATGATTTATCATCAGTTG
CR00-XX-FV2-056-B05-EM.F Coffea racemosa FV2 Coffea racemosa cDNA clone CR00-XX-FV2-056-B05-EM, mRNA sequence.
GT668282.1:238-256
TACAGTCCATCTGTTCAGTACACTCTATAT238GAGATGGCAAAGGCTGTTCTGGGAAGGTTTCATGATTTATCATCGGTTG
Coffea arabica microsatellite DNA, clone 45-6CTG.
AJ308854.1:197-215
TACAGTCCATCTGTTCAGTACACTCTATAC197GAGATGGCAAAGGCTGTTCTGGGAAGGTTCTCTCTCTCTCTCTCTCCCT
Cenchrus purpureus cultivar elephant grass chromosome B1.
CP053461.1:134782512-134782530
GGAAGATTGCCGGGGCAACCCCAAGGTCCT134782512GAGATGGCAAAGGCTGTTCAAACTCGGTCGGGAAAGGAGACTGAAGATC
Cenchrus purpureus cultivar elephant grass chromosome B2.
CP053462.1:24832124-24832142
GGAAGATTGCTGGGGCAGCCCCAAGGTCCC24832124GAGATGGCAAAGGCTGTTCAAACTCGGTCGGGAAAGGAGACTGAAGATC
Logfia minima genome assembly, chromosome: 7.
OY992769.1:1294845-1294863
ACCAAACCTTCTACTTACAAGAAGGAAAAT1294845GAGATGGCAAAGGCTGTTCTAATGTTGGATGATGAAGCCTATGATTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAACAGCCTTTGCCATCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAACAGCCTTTGCCATCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.139 | 0.130 | search_plus_done; http://172.18.8.135:50400/match?q=GAACAGCCTTTGCCATCTC&k=0&no_gap=0&offset=0&limit=50
0.494 | 0.356 | search_minus_done; http://172.18.8.135:50400/match?q=GAGATGGCAAAGGCTGTTC&k=0&no_gap=0&offset=0&limit=47
0.501 | 0.006 | cgi_end;

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