GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:53:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Micromys minutus genome assembly, chromosome: 30.
OZ004810.1:6668596-6668615
CCATGTTACTCCTGTCTTTTTCATCAAGAG6668596GAACATCTTCCATCCGCTTGCTAAGAAAACTTGTAATAAACACACCGCAC
VCDC4993 Daucus carota subsp. sativus B493_1-2kb Daucus carota subsp. sativus cDNA clone CAR02_007_N23 5', mRNA sequence.
JG757311.1:398-417
TGTTTTGACCAGCATGGAGATATTGCCTGC398CAAGCGGATGGAAGATGTTCTGGAGCATGCTTTTGAAGGTGGATGCCCTT
VCDC5095 Daucus carota subsp. sativus B493_1-2kb Daucus carota subsp. sativus cDNA clone CAR02_008_C08 5', mRNA sequence.
JG757413.1:398-417
TGTTTTGACCAGCATGGAGATATTGCCTGC398CAAGCGGATGGAAGATGTTCTGGAGCATGCTTTTGAAGGTGGATGCTCTT
VCDC5206 Daucus carota subsp. sativus B493_1-2kb Daucus carota subsp. sativus cDNA clone CAR02_008_H01 5', mRNA sequence.
JG757524.1:398-417
TGTTTTGACCAGCATGGAGATATTGCCTGC398CAAGCGGATGGAAGATGTTCTGGAGCATGCTTTTGAAGGTGGATGCCCTT
VCDC17495 Daucus carota subsp. sativus B493_2+kb Daucus carota subsp. sativus cDNA clone CAR03_010_L05 5', mRNA sequence.
JG770533.1:183-202
AATAAATGTATTTTGTCAGATATTGCCTGC183CAAGCGGATGGAAGATGTTCTGGAGCATGCTTTTGAAGGTGGATGCCCTT
VCDC17521 Daucus carota subsp. sativus B493_2+kb Daucus carota subsp. sativus cDNA clone CAR03_010_M21 5', mRNA sequence.
JG770559.1:183-202
AATAAATGTATTTTGTCAGATATTGCCTGC183CAAGCGGATGGAAGATGTTCTGGAGCATGCTTTTGAAGGTGGATGCCCTT
VCDC17838 Daucus carota subsp. sativus B493_2+kb Daucus carota subsp. sativus cDNA clone CAR03_011_N21 5', mRNA sequence.
JG770876.1:183-202
AATAAATGTATTTTGTCAGATATTGCCTGC183CAAGCGGATGGAAGATGTTCTGGAGCATGCTTTTGAAGGTGGATGCCCTT
Daucus carota subsp. sativus cultivar DH1 chromosome 2.
CP093344.1:31139908-31139927
AATAAATGTATTTTGTCAGATATTGCCTGC31139908CAAGCGGATGGAAGATGTTCTGGAGCATGCTTTTGAAGGTGGATGCCCTT
Daucus carota isolate Kuroda chromosome 2.
CP125302.1:29120224-29120243
AATAAATGTATTTTGTCAGATATTGCCTGC29120224CAAGCGGATGGAAGATGTTCTGGAGCATGCTTTTGAAGGTGGATGCCCTT
Burkholderia sp. PAMC 26561 chromosome 2, complete sequence.
CP014307.1:476891-476910
CCGACCCAACACCCGAACCCATTGCAAGCG476891CAAGCGGATGGAAGATGTTCAGGCTTGCGACAAAGCCCGCAAAGATCGCG
Burkholderia sp. PAMC 28687 chromosome 3, complete sequence.
CP014507.1:999846-999865
CCGACCCAACACCCGAACCCATTGCAAGCG999846CAAGCGGATGGAAGATGTTCAGGCTTGCGACAAAGCCCGCAAAGATCGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAACATCTTCCATCCGCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAACATCTTCCATCCGCTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=GAACATCTTCCATCCGCTTG&k=0&no_gap=0&offset=0&limit=50
1.051 | 0.946 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGCGGATGGAAGATGTTC&k=0&no_gap=0&offset=0&limit=49
1.057 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).