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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 12:02:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-010N06, 3' end sequence.
DK519316.1:314-333
TGTACTAAAGGAAGGAACATCGATATTTTT314GAACCCACTTGTGATATGGGCATGGGCTGGAGTTTTCATCAATGGCATTA
Brassica oleracea var. viridis mRNA, clone: KALE-011N06, 3' end sequence.
DK519695.1:320-339
GGTACTAAAGGAAGGAACATCGATATCTTT320GAACCCACTTGTGATATGGGCATGGGCTGGACTTCTCATCAATGGCATTA
Brassica oleracea var. viridis mRNA, clone: KALE-071A17, 3' end sequence.
DK542306.1:297-316
TGTACTAAAGGAAGGAACATCGATATCTTT297GAACCCACTTGTGATATGGGCATGGGCTGGACTTCTCATCAATGGCATTA
Brassica oleracea var. viridis mRNA, clone: KALE-098B08, 3' end sequence.
DK552644.1:323-342
TGTACTAAAGGAAGGAACATCGATATCTTT323GAACCCACTTGTGATATGGGCATGGGCTGGACTTCTCATCAATGGCATTA
24RDBNH_UP_034_G09_20FEB2004_067 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
EE506491.1:514-533
TGTACTAAAGGAAGGAACATCGATATCTTT514GAACCCACTTGTGATATGGGCATGGGCTGGACTTCTCATCAATGGCATTA
RCLFE85TP Castor bean cDNA library from leaves, 1.7 kb Ricinus communis cDNA clone RCLFE85, mRNA sequence.
EG660453.1:433-452
TGCGCTCAAGGAAGGCACTCCCATATCTGT433GAACCCACTTGTGATATGGGCATGGGCTGGAATGCTTATTAATGCCATCA
46RDOAG_UP_061_F10_01FEB2006_070 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES938320.1:129-148
TGTACTAAAGGAAGGAACATCGATATCTTT129GAACCCACTTGTGATATGGGCATGGGCTGGACTTCTCATCAATGGCATTA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10993.
FX728974.1:1343-1362
TGTACTAAAGGAAGGAACATCGATATCTTT1343GAACCCACTTGTGATATGGGCATGGGCTGGACTCCTCATCAATGGCATTA
odh44c04.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH959256.1:520-539
TGTACTAAAGGAAGGAACATCGATATCTTT520GAACCCACTTGTGATATGGGCATGGGCTGGACTTCTCATCAATGGCATTA
BOT01-77N9TR BOT01 Brassica oleracea genomic clone BOT01-77N9, genomic survey sequence.
FI734130.1:868-887
ATGTACTAAAGGAAGGACATCGATATCTTT868GAACCCACTTGTGATATGGGCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189396.2:137465-137484
TGTACTAAAGGAAGGAACATCGATATCTTT137465GAACCCACTTGTGATATGGGCATGGGCTGGACTCCTCATCAATGGCATTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH076J22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC241147.1:56004-56023
TGTACTAAAGGAAGGAACATCGATATCTTT56004GAACCCACTTGTGATATGGGCATGGGCTGGACTCCTCATCAATGGCATTA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:77931373-77931392
TGTACTAAAGGAAGGAACATCGATATCTTT77931373GAACCCACTTGTGATATGGGCATGGGCTGGACTTTTCATCAATGGCATTA
Brassica rapa AT5G05740 mRNA, partial sequence.
KY538588.1:780-799
TGTACTAAAGGAAGGAACATCGATATCTTT780GAACCCACTTGTGATATGGGCATGGGCTGGACTCCTCATCAATGGCATTA
Ricinus communis AT5G05740 mRNA, partial sequence.
KY538602.1:780-799
TGCGCTCAAGGAAGGCACTCCCATATCTGT780GAACCCACTTGTGATATGGGCATGGGCTGGAATGCTTATTAATGCCATCA
BNSCS1CT_UP_064_B07_26MAR2007_061 Brassica napus BNSCS1CT Brassica napus cDNA 5', mRNA sequence.
EV014827.1:451-470
TAATGCCATTGATGAGAAGTCCAGCCCATG451CCCATATCACAAGTGGGTTCAAAGATATCGATGTTCCTTCC
0240536 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO954794.1:429-448
TAATGCCATTGATGAGGAGTCCAGCCCATG429CCCATATCACAAGTGGGTTCAAAGATATCGATGTTCCTTCCTTTAGTACA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_2814.
FX659685.1:546-565
TAATGCCATTGATGAGAAGTCCAGCCCATG546CCCATATCACAAGTGGGTTCAAAGATATTGATGTTCCTTCCTTGAGTACA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3852.
FX695732.1:489-508
TAATGCCATTGATGAGGAGTCCAGCCCATG489CCCATATCACAAGTGGGTTCAAAGATATCGATGTTCCTTCCTTTAGTACA
BOHOK21TF BOHO Brassica oleracea genomic clone BOHOK21, genomic survey sequence.
BH591918.1:201-220
TAATGCCATTGATGAGAAGTCCAGCCCATG201CCCATATCACAAGTGGGTTCAAAGATATCGATGTTCCTTCCTTTAGTACA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:991177-991196
TAATGCCATTGATGAGGAGTCCAGCCCATG991177CCCATATCACAAGTGGGTTCAAGGATATCGATGTTCCTTCCTTTAGTACA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:997257-997276
TAATGCCATTGATGAGGAGTCCAGCCCATG997257CCCATATCACAAGTGGGTTCAAGGATATCGATGTTCCTTCCTTTAGTACA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:1236910-1236929
TAATGCCATTGATGAGAAGTCCAGCCCATG1236910CCCATATCACAAGTGGGTTCAAAGATATCGATGTTCCTTCCTTTAGTACA
Brassica rapa genome, scaffold: A03.
LR031572.1:994666-994685
TAATGCCATTGATGAGGAGTCCAGCCCATG994666CCCATATCACAAGTGGGTTCAAAGATATCGATGTTCCTTCCTTTAGTACA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:1291672-1291691
TAATGCCATTGATGAGAAGTCCAGCCCATG1291672CCCATATCACAAGTGGGTTCAAAGATATCGATGTTCCTTCCTTTAGTACA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:995585-995604
TAATGCCATTGATGAGGAGTCCAGCCCATG995585CCCATATCACAAGTGGGTTCAAAGATATCGATGTTCCTTCCTTTAGTACA

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