GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 06:01:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH031_07495m, 5' end sequence.
AB450711.1:53-75
GTTCCAACACCAACCCCTCCCACACAATAA53GAACCTTCCTCTTCCCATCACTTAGCTACATTCATTCCCTCAGTAGCTCTTTC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH032_07495m, 5' end sequence.
AB450712.1:53-75
GTTCCAACACCAACCCCTCCCACACAATAA53GAACCTTCCTCTTCCCATCACTTAGCTACATTCATTCCCTCAGTAGCTCTTTC
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:5198533-5198555
GTTCCAACACCAACCCCTCCCACACAATAA5198533GAACCTTCCTCTTCCCATCACTTAGCTACTTTCATTCCCTCAGTAGCTCTTTC
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:5528879-5528901
GTTCCAACACCAACCCCTCCCACACAATAA5528879GAACCTTCCTCTTCCCATCACTTAGCTACTTTCATTCCCTCAGTAGCTCTTTC
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:5123111-5123133
GTTCCAACACCAACCCCTCCCATACAGTAA5123111GAACCTTCCTCTTCCCATCACTTAGCTACTTTCATTCCCTCAGTAGCTCTTTC
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:5497889-5497911
GTTCCAACACCAACCCCTCCCACACAATAA5497889GAACCTTCCTCTTCCCATCACTTAGCTACTTTCATTCCCTCAGTAGCTCTTTC
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:5215049-5215071
GTTCCAACACCAACCCCTCCCACACAATAA5215049GAACCTTCCTCTTCCCATCACTTAGCTACTTTCATTCCCTCAGTAGCTCTTTC
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:26435314-26435336
GAAAGAGCTACTGAGGGAATGAAAGTAGCT26435314AAGTGATGGGAAGAGGAAGGTTCTTATTGTGTGGGAGGGGTTGGTGTTGGAAC
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:23223956-23223978
GAAAGAGCTACTGAGGGAATGAAAGTAGCT23223956AAGTGATGGGAAGAGGAAGGTTCTTATTGTGTGGGAGGGGTTGGTGTTGGAAC
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:25141254-25141276
GAAAGAGCTACTGAGGGAATGAAAGTAGCT25141254AAGTGATGGGAAGAGGAAGGTTCTTATTGTGTGGGAGGGGTTGGTGTTGGAAC
Malus domestica genome assembly, chromosome: 14.
OU696690.1:26323528-26323550
GAAAGAGCTACTGAGGGAATGAAAGTAGCT26323528AAGTGATGGGAAGAGGAAGGTTCTTATTGTGTGGGAGGGGTTGGTGTTGGAAC
Malus domestica genome assembly, chromosome: 14.
OU744966.1:26964572-26964594
GAAAGAGCTACTGAGGGAATGAAAGTAGCT26964572AAGTGATGGGAAGAGGAAGGTTCTTATTGTGTGGGAGGGGTTGGTGTTGGAAC
Malus domestica genome assembly, chromosome: 14.
OU745004.1:26869143-26869165
GAAAGAGCTACTGAGGGAATGAAAGTAGCT26869143AAGTGATGGGAAGAGGAAGGTTCTTATTGTGTGGGAGGGGTTGGTGTTGGAAC
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:21884654-21884676
GAAAGAGCGACTGAGGGAATGAATGTAGCT21884654AAGTGATGGGAAGAGGAAGGTTCTTATTGTGTGGGAGGGGTTGGTGTTGGAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAACCTTCCTCTTCCCATCACTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAACCTTCCTCTTCCCATCACTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=GAACCTTCCTCTTCCCATCACTT&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTGATGGGAAGAGGAAGGTTC&k=0&no_gap=0&offset=0&limit=43
0.157 | 0.005 | cgi_end;

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