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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:49:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sus scrofa scrofa breed NS chromosome 11.
CP071562.1:1272580-1272597
ACGAGACACAGAACCATTATCAAAGGTACA1272580GAACGATGGAATGAAGTGTTTTTTGGCCACACCTGAGGCCTAAGGAAG
Sus scrofa genome assembly, chromosome: 11.
OY997218.1:1768066-1768083
ACGAGACACAGAACCATTATCAAAGGTACA1768066GAACGATGGAATGAAGTGTTTTTTGGCCACACCTGAGGCCTAAGGAAG
Marinifilaceae bacterium isolate 33d5628b-5a91-4dd6-8f06-1354c736e2d9 genome assembly, chromosome: 28.
OY763287.1:58595-58612
TACTTTTGCCACAAATGTTTTTGATGGCTT58595GAACGATGGAATGAAGTGTTCCGGTATAATAATTGTTGTATTTTTAGA
Citrus reticulata microsatellite DNA, locus mCrCIR06B05, allele 06B05-ga(26).
AM489744.1:200-217
GACCTGGCTGATATATGGAATATAGTATGG200GAACGATGGAATGAAGTGCCTTAAAAAACACGTATTTTTTGATAGCCT
Logfia minima genome assembly, chromosome: 10.
OY992772.1:11178919-11178936
TTTTATTGGTCATATTTTTTGAACAAAATG11178919GAACGATGGAATGAAGTGGACTTGCTTCAATGGAAAATGGCAAATAGA
Dorea formicigenerans strain ATCC 27755 chromosome, complete genome.
CP102279.1:722826-722843
ACGCAAAAAATGCTCCTGATGGCTATTTAT722826GAACGATGGAATGAAGTGAAAGTATCTGATGCAGCGAAACGAATAGGA
Coprococcus catus GD/7 draft genome.
FP929038.1:1037136-1037153
ACGCAAAAAATGCTTCTGATTGCCATTTAT1037136GAACGATGGAATGAAGTGAGAGTATCTGGTGCGGCAAAACGTTTGGAA
Coprococcus catus isolate MGYG-HGUT-01714 genome assembly, chromosome: 1.
LR698973.1:1037136-1037153
ACGCAAAAAATGCTTCTGATTGCCATTTAT1037136GAACGATGGAATGAAGTGAGAGTATCTGGTGCGGCAAAACGTTTGGAA
Macrobrachium nipponense isolate FS-2020 chromosome 22.
CP062013.1:65465646-65465663
GAAGGAGAGAATAAAAACATTTAAGTGGTT65465646GAACGATGGAATGAAGTGTTTTAGTGAAAGAAAAATATACGGGCGTAG
Helicoverpa zea isolate GA-R chromosome 13.
CP089900.1:1647907-1647924
AGCCGGTATTTTATTACGTCATAAAATATT1647907GAACGATGGAATGAAGTGACTGTACGATGCACACTGCAATTTTTAGTC
Nippostrongylus brasiliensis strain MIMR chromosome X.
CP130737.1:7198282-7198299
CTTTTTCCATTATCACAGGTTCCTAATTAT7198282GAACGATGGAATGAAGTGTTGAATCACTCTGACAAGATCAACTTTACA
Brachyptera putata genome assembly, chromosome: 12.
OU015473.1:15156633-15156650
CAATAGTATGTCGGAATGTTTACAATTATT15156633GAACGATGGAATGAAGTGGCAAAACTATAGTATTTTTCAGATTTAGAA
Eilema depressum genome assembly, chromosome: 23.
OU612035.1:12047118-12047135
AATATTTTCTGTTTTTGAATGAAACTATTT12047118GAACGATGGAATGAAGTGAACAGATTGCTACTAGGCAAGTGTGTTCCA
Chironomus riparius genome assembly, chromosome: 1.
OU895877.1:38314276-38314293
TTGACATCGACCAACCAAGTCATTTTGTAC38314276GAACGATGGAATGAAGTGGCTCGCGAAAGCATCATTTGCACAAATTAA
Myathropa florea genome assembly, chromosome: 3.
OV884004.1:80693664-80693681
GGAATCCATTTGGTGGTTGAGCTTAGCATC80693664GAACGATGGAATGAAGTGCTTTGAGCTGCTGCCTATTGTCTACGAAGG
Amblyteles armatorius genome assembly, chromosome: 9.
OW121694.1:9401596-9401613
ATCTCACTCCGCAGCCCGACTAAACGAACG9401596GAACGATGGAATGAAGTGGCGAACGAGTTACACGTTTTCCTCCTCGCT
Alloplasta piceator genome assembly, chromosome: 7.
OX333077.1:30458303-30458320
TAATTGACGGCTTACGAGTTATCACTTGGT30458303GAACGATGGAATGAAGTGCAAAATCTATGTGCAATTTTATTTTTTTTT
Rhaphigaster nebulosa genome assembly, chromosome: 2.
OX411308.1:20899552-20899569
GTGTATACGCCAATATTTCGGTAAAAAATG20899552GAACGATGGAATGAAGTGATCTTGAAAATCTTCACTCCAAGCACTCCA
Rhaphigaster nebulosa genome assembly, chromosome: 4.
OX411310.1:102217045-102217062
GCATGAATTACTACCTGTCTGTAATAACTG102217045GAACGATGGAATGAAGTGATCGTCAGTAGAGCCCTTCAAATCTGCCTA
Rhaphigaster nebulosa genome assembly, chromosome: 5.
OX411311.1:9353814-9353831
CCACTGACGATCACTCCAAATGGAACAATG9353814GAACGATGGAATGAAGTGACTGGAATGCTTGGAGTGAAGAAGATTTCA
Euspilapteryx auroguttella genome assembly, chromosome: 17.
OX637658.1:9789181-9789198
AACATGGGGCTGAGTGAAGCGGAGATCAAG9789181GAACGATGGAATGAAGTGACGAATAAGACCCTGTTGAAGCGGTACTGC
Sepiola atlantica genome assembly, chromosome: 27.
OY744541.1:68363361-68363378
ATAAATGTAGATAGAAAGAAAAAAAACAAA68363361GAACGATGGAATGAAGTGATATAGTCCTCACAAAGAAAAACGACTATA
Sepioteuthis lessoniana genome assembly, chromosome: 17.
OY757920.1:15331100-15331117
TGCTACCACCCCGGCTTAGAATGGACCTGG15331100GAACGATGGAATGAAGTGTTACCTCGCATCTCCAAAGCTCCTGCATTT
Arvicola amphibius genome assembly, chromosome: 6.
LR862385.2:137586009-137586026
TGCTCATTTCTCTGCTCTGTGATTACACTC137586009CACTTCATTCCATCGTTCCTACTGTTCATCTGTTTGGATTTGATCTGG
Myotis daubentonii genome assembly, chromosome: 17.
OY725376.1:17134909-17134926
GGTGTGCCTGCCTCCCTCCTGGCAGGCTTA17134909CACTTCATTCCATCGTTCAGGCCCAGGGCCATTTCTCACCCTGTTGTC
Valencia hispanica genome assembly, chromosome: 23.
OY747722.1:9046961-9046978
CATTCCAACCACAGATTCCGACGGTTCTCC9046961CACTTCATTCCATCGTTCCCTAACACAAGTCACAGATGAGAGTGTCAG
Larus fuscus genome assembly, chromosome: 1.
OZ010753.1:17672789-17672806
GAGGCCACTCATGATCACACCTGATTGAGT17672789CACTTCATTCCATCGTTCAGCCTCTGCTGCCACTCATGTCAACCCGCT
Gossypium bickii isolate GPG1lz chromosome 8.
CP106712.1:130474028-130474045
GTGCGTATGATGCATTTTTATTAATGTTAC130474028CACTTCATTCCATCGTTCATTAATGGTTTTATTGATCTAATATTTTAT
Secale cereale genome assembly, chromosome: 2R.
LR738710.1:645405747-645405764
CTCGCGGCCGTATCTTTCTTCAGCGTCCAT645405747CACTTCATTCCATCGTTCGTTGAGCGTATCCTATTTGGCTTTAAGCCA
Citrus sinensis genome assembly, chromosome: 7.
OY754324.1:24109394-24109411
AGGCTATCAAAATATACATGTTTTTTAAGG24109394CACTTCATTCCATCGTTCCCATATTATATTTTATATATCAGCCAGGTC
Citrus sinensis genome assembly, chromosome: 7.
OY754324.1:24217002-24217019
AGGCTATAAAAAAATACATGTTTTTTAAGG24217002CACTTCATTCCATCGTTCCCATACTATATTCCATATATCAGCCAGGTC
Citrus sinensis genome assembly, chromosome: 7.
OY754324.1:24255499-24255516
AGGCTATCAAAAAATACGTGTTTTTTAAGG24255499CACTTCATTCCATCGTTCCCATACTATATTCCATATATCAGCCAGGTC
[Ruminococcus] lactaris ATCC 29176 chromosome, complete genome.
CP102292.1:1319971-1319988
TCCTATTCGTTTTGCTGCATCAGATACTTT1319971CACTTCATTCCATCGTTCATAAATAGCCATCAGAAGCATTTTTTGCGT
Macrobrachium nipponense isolate FS-2020 chromosome 47.
CP062011.1:31544223-31544240
CTAATCTAAACACAGGTCAGAAGGGTTAGC31544223CACTTCATTCCATCGTTCCCGAAGGAAAATGTTTCTATTCGTAGGAAG
Smittia aterrima isolate YW1114-1 chromosome 2.
CP093830.1:12953305-12953322
TTTGGCCTTTTAATTGGAAGCTTTGGCTCC12953305CACTTCATTCCATCGTTCAAAAGTTTGCTCATGTTGTACTTATCGCCT
Syritta pipiens genome assembly, chromosome: 1.
LR994571.1:64760937-64760954
GTGTCGCACCTGTTTTAATATTTAAGCTCT64760937CACTTCATTCCATCGTTCTCGAGGTGATATTACCCTCGCCCCAGGAAC
Aplidium turbinatum genome assembly, chromosome: 2.
OU964919.1:45653678-45653695
GCTGTGAGATCTTCGCCTTCTGAGAAGCTG45653678CACTTCATTCCATCGTTCACAAATCTACCTCTGTTTTCCTCTTCATTT
Lumbricus rubellus genome assembly, chromosome: 4.
OX243814.1:34608029-34608046
TGCCCCTCTGCTGCCCCACCTCCGTCGTTC34608029CACTTCATTCCATCGTTCGTCGTGGTTCATCTTCTCATTCTTCTCGCC
Rhaphigaster nebulosa genome assembly, chromosome: 5.
OX411311.1:12671815-12671832
AAAGATGATTTCAAGGACACCATTGACGAT12671815CACTTCATTCCATCGTTCCATACTTGGTAGTGATTCACGCTCCTACAG
Metopia argyrocephala genome assembly, chromosome: 2.
OY756209.1:60561537-60561554
GTTCGGTCATTAAAAGTCATCCGGATCGTT60561537CACTTCATTCCATCGTTCACTTCGTTCATTTGTTCTGGTCGTTCGGTC
Tenebrio molitor genome assembly, chromosome: 8.
OZ014545.1:6252819-6252836
CTTCCAAATAATAATAATACATTTAAATGT6252819CACTTCATTCCATCGTTCATCAGTAACATATCCCTGATGTTTTAGGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAACGATGGAATGAAGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAACGATGGAATGAAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.431 | 0.423 | search_plus_done; http://172.18.8.135:50400/match?q=GAACGATGGAATGAAGTG&k=0&no_gap=0&offset=0&limit=50
0.606 | 0.174 | search_minus_done; http://172.18.8.135:50400/match?q=CACTTCATTCCATCGTTC&k=0&no_gap=0&offset=0&limit=27
0.617 | 0.012 | cgi_end;

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