GGGenome | Results

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2025-03-15 08:42:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sciurus vulgaris genome assembly, chromosome: 14.
LR738625.1:40551561-40551580

CATGGACCAAAGTCTCTGGGTATTTTCCTG40551561GAACTTCCGCTTCCTTCCTCTTCTCTAAGATGGTAGGTGGGTGGGCCGAA

Ciona intestinalis cDNA, clone:rcieg45f19, 3' end, single read.
AV866321.1:111-130

TCTGAATCCTCTGTTCCTGATGAAGAAGAT111GAACTTCCGCTTCCTTCCTCCTCGCTCTCACTGGAGTCCTCATCAGAGTA

Ciona intestinalis cDNA, clone:cigd041h03, 5' end, single read.
BW290476.1:187-206

TACTCTGATGAGGACTCCAGTGAGAGCGAG187GAGGAAGGAAGCGGAAGTTCATCTTCTTCATCAGGAACAGAGGATTCAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.173 | 0.164 | search_plus_done; http://172.18.8.135:50400/match?q=GAACTTCCGCTTCCTTCCTC&k=0&no_gap=0&offset=0&limit=50
0.297 | 0.125 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGAAGGAAGCGGAAGTTC&k=0&no_gap=0&offset=0&limit=48
0.298 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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