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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:07:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH012_02254m, 5' end sequence.
AB450699.1:9-31
ATCACCTA9GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTGTCCTCCCTCTCTCTCT
Mdfr3022m18.y1 Mdfr Malus domestica cDNA clone Mdfr3022m18 5' similar to TR:O81020 O81020 F12C20.9 PROTEIN, mRNA sequence.
CO753033.1:123-145
CATTGCTTCCTCCTTCTTCTTCATCGCCCA123GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
010616AVBC004435HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004435, mRNA sequence.
EB127293.1:119-141
CATTGCTTCCTCCTTCTTCTTCATCGCCCA119GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
020801AVBC009549HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC009549, mRNA sequence.
EB131100.1:109-131
CATTGCTTCCTCCTTCTTCTTCATCGCCCA109GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
010513AAXA001062HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA001062, mRNA sequence.
EB134705.1:147-169
CATTGCTTCCTCCTTCTTCTTCATCGCCCA147GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
030109ABLC001280HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC001280, mRNA sequence.
EB155483.1:120-142
CATTGCTTCCTCCTTCTTCTTCATCGCCCA120GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
030121ABLC002259HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC002259, mRNA sequence.
EB155746.1:122-144
CATTGCTTCCTCCTTCTTCTTCATCGCCCA122GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
030123ABLC003418HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC003418, mRNA sequence.
EB156089.1:112-134
CATTGCTTCCTCCTTCTTCTTCATCGCCCA112GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
030128ABLC005248HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC005248, mRNA sequence.
EB156653.1:128-150
CATTGCTTCCTCCTTCTTCTTCATCGCCCA128GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
030128ABLC005341HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC005341, mRNA sequence.
EB156670.1:120-142
CATTGCTTCCTCCTTCTTCTTCATCGCCCA120GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
030212ABQA001934HT (ABQA) Royal Gala flower Malus domestica cDNA clone ABQA001934, mRNA sequence.
EB157078.1:128-150
CATTGCTTCCTCCTTCTTCTTCATCGCCCA128GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
Pyrus pyrifolia mRNA, clone: NFR1_02_54, 5' end sequence, expressed in fruit.
HX745837.1:9-31
ATCACCTA9GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTGTCCTCCCTCTCTCTCT
Pyrus pyrifolia mRNA, clone: NFR3_20_20, 5' end sequence, expressed in fruit.
HX752814.1:7-29
GACCTA7GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTGTCCTCCCTCTCTCTCT
TSA: Pyrus pyrifolia mRNA, contig: contig_5993.
FX432750.1:9-31
ATCACCTA9GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTGTCCTCCCTCTCTCTCT
TSA: Pyrus x bretschneideri Unigene10668_XinShao mRNA sequence.
JR605726.1:193-215
ATCCAGATTTTCCTTCTTCTTCATCACCTA193GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTGTCCTCCCTCTCTCTCT
TSA: Pyrus x bretschneideri Unigene49261_XinShao mRNA sequence.
JR639306.1:193-215
ATCCAGATTTTCCTTCTTCTTCATCACCTA193GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTGTCCTCCCCCTCTCTCT
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143363.1:27402517-27402539
CATTGCTTCCTCCTTCTTCTTCATCGCCCA27402517GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143380.1:24723017-24723039
CATTGCTTCCTCCTTCTTCTTCATCGCCCA24723017GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTAAGCAATGGGAGCTTCCAA
Malus sylvestris genome assembly, chromosome: 6.
OU696508.1:27390840-27390862
CATTGCTTCCTCCTTCTTCTTAATCGCCCA27390840GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTCTC
Malus domestica genome assembly, chromosome: 6.
OU696682.1:27697990-27698012
CATTGCTTCCTCCTTCTTCTTCATCGCCCA27697990GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTCTC
Malus domestica genome assembly, chromosome: 6.
OU744547.1:27458366-27458388
CATTGCTTCCTCCTTCTTCTTCATCGCCCA27458366GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
Malus domestica genome assembly, chromosome: 6.
OU744958.1:27318414-27318436
CATTGCTTCCTCCTTCTTCTTCATCGCCCA27318414GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
Malus domestica genome assembly, chromosome: 6.
OU744996.1:23537261-23537283
CATTGCTTCCTCCTTCTTCTTCATCGCCCA23537261GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
Malus x robusta genome assembly, chromosome: 14.
OY720338.1:23356508-23356530
CATTGCTTCCTCCTTCTTCTTCATCGCCCA23356508GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTCTCTCTCTCTCTCTAAG
Pyrus communis genome assembly, chromosome: 12.
OY757079.1:20278362-20278384
ATCCAGATTTTCCTTCTTCTTCATCACCTA20278362GAAGAAAGCAACCCATTTAGCTGAAGAACTCTCTCTGTCCTCCCCCCCTCTCT
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141915.1:7606570-7606592
GAGAGAGAGAGAGAGAGAGAGAGAGTTCTT7606570CAGCTAAATGGGTTGCTTTCTTCTGGGCGATGAAGAAGAAGGAGGAAGCAATG
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141932.1:8019379-8019401
CTTAGAGAGAGAGAGAGAGAGAGAGTTCTT8019379CAGCTAAATGGGTTGCTTTCTTCTGGGCGATGAAGAAGAAGGAGGAAGCAATG
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141961.1:7389407-7389429
TGCTTAGAGAGAGAGAGAGAGAGAGTTCTT7389407CAGCTAAATGGGTTGCTTTCTTCTGGGCGATTACGAAGAAGGAGGAAGCAATG
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141978.1:7559141-7559163
TAGAGAGAGAGAGAGAGAGAGAGAGTTCTT7559141CAGCTAAATGGGTTGCTTTCTTCTGGGCGATTACGAAGAAGGAGGAAGCAATG
Crataegus laevigata genome assembly, chromosome: 13.
OY756950.1:8489542-8489564
AGAGAGAGAGGGAGGACAGAGAGAGTTCTT8489542CAGCTAAATGGGTTGCTTTCTTCTAGGTGATCAAGAAGAAGGAAGCAATGAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAGAAAGCAACCCATTTAGCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGAAAGCAACCCATTTAGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.939 | 0.930 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGAAAGCAACCCATTTAGCTG&k=0&no_gap=0&offset=0&limit=50
1.012 | 0.073 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCTAAATGGGTTGCTTTCTTC&k=0&no_gap=0&offset=0&limit=25
1.015 | 0.003 | cgi_end;

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