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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:01:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus mRNA, clone: RSCF05J02, 5' end sequence.
FY429216.1:743-762
GTGGACGATGATAAGATGGAGTTGAATACT743GAAGAGCAAGCGGAGTTGAGTATTGAAGATGATGATGATGATGATGACTG
Raphanus sativus mRNA, clone: RSCF12O16, 5' end sequence.
FY431098.1:742-761
GTGGACGATGATAAGATGGAGTTGAATACT742GAAGAGCAAGCGGAGTTGAGTATTGAAGATGATGATGATGATGATGACTG
Raphanus sativus mRNA, clone: RSCL17M08, 5' end sequence.
FY438795.1:751-770
GTGGACGATGATAAGATGGAGTTGAATACT751GAAGAGCAAGCGGAGTTGAGTATTGAAGATGATGATGATGATGATGAC
Raphanus sativus mRNA, clone: RSCS03O24, 5' end sequence.
FY447210.1:506-525
GTGGACGATGATAAGATGGAGTTGAATACT506GAAGAGCAAGCGGAGTTGAGTATTGAAGATGATGATGATGATGATGACTG
Raphanus sativus mRNA, clone: RSCS23J17, 5' end sequence.
FY454165.1:727-746
GTGGACGATGATAAGATGGAGTTGAATACT727GAAGAGCAAGCGGAGTTGAGTATTGAAGATGATGATGATGATG
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:6096150-6096169
GTGGACGATGATAAGATGGAGTTGAATACT6096150GAAGAGCAAGCGGAGTTGAGTATTGAAGATGATGATGATGATGATGACTG
Eristalinus aeneus genome assembly, chromosome: 1.
OY019130.1:128482382-128482401
TTGGACTTTTGTTGCGCCAAAATTTAATTT128482382GAAGAGCAAGCGGAGTTGAGAACCCACCGTAGTCAAACAAGGGGCATTTG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12307.
FX663735.1:514-533
CAGTCATCATCATCATCATCATCTTCAATA514CTCAACTCCGCTTGCTCTTCAGTATTCAACTCCATCTTATCATCGTCCAC
TSA: Raphanus sativus RS28322 mRNA sequence.
JT812869.1:611-630
CAGTCATCATCATCATCATCATCTTCAATA611CTCAACTCCGCTTGCTCTTCAGTATTCAACTCCATCTTATCATCGTCCAC
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:37521986-37522005
CAGTCATCATCATCATCATCATCTTCAATA37521986CTCAACTCCGCTTGCTCTTCAGTATTCAACTCCATCTTATCATCGTCCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAAGAGCAAGCGGAGTTGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGAGCAAGCGGAGTTGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.747 | 0.738 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGAGCAAGCGGAGTTGAG&k=0&no_gap=0&offset=0&limit=50
0.874 | 0.127 | search_minus_done; http://172.18.8.135:50400/match?q=CTCAACTCCGCTTGCTCTTC&k=0&no_gap=0&offset=0&limit=43
0.876 | 0.002 | cgi_end;

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