GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:49:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Zootoca vivipara genome assembly, chromosome: 6.
OY735907.1:76926613-76926632
ATGCACACATACACACTGAGAGAGAGAAAG76926613GAAGATGGGGTGGGTGTTTGGTGACAGATCTCAGCTTAGCAGTGATCTGT
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 3.
OX392558.1:21609659-21609678
GGGTTCTGTTGTTGTGCGAGGAAAAATCGA21609659GAAGATGGGGTGGGTGTTTGGTTCATTAAGTATACCGACAAAGGTGTAAA
Alnus glutinosa genome assembly, chromosome: 1.
OY340898.1:2601658-2601677
TGAACTTTTTGTAGATGAAGAGAGAAGAGA2601658GAAGATGGGGTGGGTGTTTGTGGGTTAGGGGGGGGGGGGGGGGGGGGGTG
Alcis repandata genome assembly, chromosome: 27.
OX421248.1:7209769-7209788
ACTTTGAGGGTCTATATCTCCGATGCGGTT7209769GAAGATGGGGTGGGTGTTTGACTAAATGTCATAGGAGTTAGCAAGGGCTA
Ovis canadensis canadensis isolate 43U chromosome 4 sequence.
CP011889.1:67965599-67965618
CTATATACACTAGCTTGCATTTGCTAACCC67965599CAAACACCCACCCCATCTTCCCCCACCTTYYCTCCCCCTTGKCAACCACA
Capricornis sumatraensis isolate serow.1 chromosome 5.
CP135631.1:72760781-72760800
CGATATACACTAGCTTGCATTTGCTAACCC72760781CAAACACCCACCCCATCTTCCCCCACCTTTTCTCCCCCTTGGCAACCACA
Sparus aurata genome assembly, chromosome: 10.
LR537130.1:18145717-18145736
GCATACACATCTATGCCATTTTCTCTCCCC18145717CAAACACCCACCCCATCTTCCAAAAGGCATGTTTTAATGTTTGATTCAAC
Scyliorhinus canicula genome assembly, chromosome: 7.
LR744036.1:137861075-137861094
CCCATCCTCTGACCACTCCCACATCCTCTC137861075CAAACACCCACCCCATCTTCTGACCCCCTACCAACCCCGTGACCACCGAT
CH216-160K6_Sp5.1 CH216 Xenopus tropicalis genomic clone CH216-160K6, genomic survey sequence.
CL081043.1:883-902
CCTGTACTTCATTGCTCCGTTCCACCATAA883CAAACACCCACCCCATCTTCAACCTATTCCCATGCCCATAACACCCCAGC
64-L112859-1033-224-P13Q-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-224-P13 3', genomic survey sequence.
JY429032.1:384-403
TTTACACCTTTGTCGGTATACTTAATGAAC384CAAACACCCACCCCATCTTCTCGATTTTTCCTCGCACAACAACAGAACCC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392555.1:38844449-38844468
CCTTAGTCGGTTTAATTTTACTTAATAAAC38844449CAAACACCCACCCCATCTTCTCGATTTTTCCTCGCACAACAACATAACCC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392555.1:38845506-38845525
TCTACACCTTTGTCAGGTTACTTAATAAAC38845506CAAACACCCACCCCATCTTCTCGATTTTTTCCCGCACAACAACAGAACCC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392564.1:42130747-42130766
CCTTAGTCAGTTTAATTTTACTTAATAAAC42130747CAAACACCCACCCCATCTTCTCGATTTTTCCTCGCACAACAACATAACCC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392564.1:42131785-42131804
TCTACACCTTTGTCAGGTTACTTAATAAAC42131785CAAACACCCACCCCATCTTCTCGATTTTTTCCCGCACAACAACAGAACCC
Galeruca laticollis genome assembly, chromosome: X.
OY998180.1:104901630-104901649
CCAATAACATTTTCAAATTTCCAATAATTT104901630CAAACACCCACCCCATCTTCTCTTAACTATCCGCAACGCAACGTGGTTCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAGATGGGGTGGGTGTTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGATGGGGTGGGTGTTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGATGGGGTGGGTGTTTG&k=0&no_gap=0&offset=0&limit=50
0.183 | 0.080 | search_minus_done; http://172.18.8.135:50400/match?q=CAAACACCCACCCCATCTTC&k=0&no_gap=0&offset=0&limit=46
0.190 | 0.007 | cgi_end;

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