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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 01:43:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

F015H05 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone F015H05, mRNA sequence.
BI809695.1:22-41
TCCCCAGCATACTCTCATACA22GAAGCATGTAGCCCATCCATTCAGATATGATGACATCGACTTTTTCTTCA
Quercus petraea EST, clone WZ0AQPAE2YI21FM1.
FN757806.1:89-108
TGATCACACTTCCCAGCATACTCTCATAAA89GAAGCATGTAGCCCATCCATTCGGAAATTATAACATCAACCTCCTCGTCT
CA00-XX-IA2-013-B06-EC.F Coffea arabica IA2 Coffea arabica cDNA clone CA00-XX-IA2-013-B06-EC, mRNA sequence.
GW460876.1:431-450
TAATCACACTTCCTAGCATGCTCTCATAAA431GAAGCATGTAGCCCATCCATTCAGAGATGATAACATCGACTTCTTCATCA
TSA: Sesamum indicum cultivar Zhongzhi 11 Unigene33345 mRNA sequence.
JL366808.1:1102-1121
TAATAACACTCCCCAGCATGCTCTCATAAA1102GAAGCATGTAGCCCATCCATTCAGAAACTATAACATCAACTTTGTCATCA
TSA: Pyrus x bretschneideri Unigene26884_XinShao mRNA sequence.
JR620303.1:606-625
TGATCACACTTCCCAGCATACTCTCATACA606GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCCCGTCA
Oryza glaberrima DNA, clone: W0001-9-B03-06C08R1, left end.
FT688757.1:430-449
TAAACATGGAACTTATATATACCTCATACA430GAAGCATGTAGCCCATCCATTCAGATATGATGACATCGACTTTTTCTTCA
Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence, complete sequence.
AC090120.8:25598-25617
TAAACATGGAACTTATATATACCTCATACA25598GAAGCATGTAGCCCATCCATTCAGATATGATGACATCGACTTTTTCTTCA
Gossypioides kirkii chromosome KI_2_4.
CP032245.1:3617777-3617796
AGGTTCAGGATAATACAATCACCTCATACA3617777GAAGCATGTAGCCCATCCATTCTGAAATTATTACATCAACCTCCTCGTCA
Gossypium raimondii isolate D5-4 chromosome D5_04.
CP032556.1:4571495-4571514
AGGTTCAGGATAATACAATCACCTCATACA4571495GAAGCATGTAGCCCATCCATTCTGAAATTATTACATCAACCTCCTCGTCA
Gossypium herbaceum isolate GPA1alz chromosome 4.
CP106703.1:5884033-5884052
AGGTTCAGGATAATACAATCACCTCATACA5884033GAAGCATGTAGCCCATCCATTCTGAAATTATTACATCAACCTCCTCGTCA
Quercus dentata isolate Qdleaves-2020 chromosome 1.
CP116444.1:488859-488878
GCATGCACAGTTCTATAATCACCTCATAAA488859GAAGCATGTAGCCCATCCATTCGGAAATTATAACATCAACCTCCTCGTCT
Quercus dentata isolate Qdleaves-2020 chromosome 1.
CP116444.1:649409-649428
GCATGCACAGTTCTATAATCACCTCATAGA649409GAAGCATGTAGCCCATCCATTCAGAAATTATAACATCAACCTCCTCATCT
Quercus variabilis isolate HB chromosome 1b.
CP129433.1:800274-800293
GCATGCACAGTTCTATAATCACCTCATAGA800274GAAGCATGTAGCCCATCCATTCGGAAATTATAACATCAACCTCCTCATCT
Quercus variabilis isolate HB chromosome 1a.
CP129445.1:1053061-1053080
GCATGCACACTTCTATAATCACCTCATAGA1053061GAAGCATGTAGCCCATCCATTCAGAAATTATAACATCAACCTCCTCATCT
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:134202-134221
ATACAGATATGTTAACAGCTACCTCATACA134202GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:132482-132501
ATACAGATATGTTAACAGCTACCTCATACA132482GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:32955601-32955620
ATACAGATATGTTAACAGCTACCTCATACA32955601GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:148558-148577
ATACAGATATGTTAACAGCTACCTCATACA148558GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143387.1:145195-145214
ATACAGATATGTTAACAGCTACCTCATACA145195GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:138564-138583
ATACAGATATGTTAACAGCTACCTCATACA138564GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Malus domestica genome assembly, chromosome: 13.
OU696689.1:139658-139677
ATACAGATATGTTAACAGCTACCTCATACA139658GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Malus domestica genome assembly, chromosome: 13.
OU744554.1:158019-158038
ATACAGATATGTTAACAGCTACCTCATACA158019GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Malus domestica genome assembly, chromosome: 13.
OU744965.1:152446-152465
ATACAGATATGTTAACAGCTACCTCATACA152446GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Malus domestica genome assembly, chromosome: 13.
OU745003.1:148126-148145
ATACAGATATGTTAACAGCTACCTCATACA148126GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Quercus robur genome assembly, chromosome: 1.
OW028765.1:1079605-1079624
GCATGCACAGTTCTATAATCACCTCATAGA1079605GAAGCATGTAGCCCATCCATTCGGAAATTATAACATCAACCTCCTCATCT
Quercus robur genome assembly, chromosome: 1.
OW028765.1:1178857-1178876
GCATGCACAGTTCTATAATCACCTCATAGA1178857GAAGCATGTAGCCCATCCATTCGGAAATTATAACATCAACCTCCTCATCT
Bromus sterilis genome assembly, chromosome: 7.
OX465601.1:125397212-125397231
CACAACAATATATTTATAGAACCTCATAGA125397212GAAGCATGTAGCCCATCCATTCAGATATAATGACATCAACTTTTTCTTCA
Phragmites australis genome assembly, chromosome: 21.
OY282632.1:5315834-5315853
TAATAGAGATGTTAATAGATACCTCATATA5315834GAAGCATGTAGCCCATCCATTCAGATATGATGACATCAACTTTTTCTTCA
Phragmites australis genome assembly, chromosome: 24.
OY282635.1:4700097-4700116
CTATAGAGATACTAATAGATACCTCGTACA4700097GAAGCATGTAGCCCATCCATTCAGATATGATGACATCAACTTTTTCTTCA
Hibiscus tridactylites genome assembly, chromosome: 19.
OY288283.1:50141251-50141270
ATAATCAGGATAATACAATTACCTCATACA50141251GAAGCATGTAGCCCATCCATTCTGAAATTATTACATCAACCTCCTCGTCA
Malus x robusta genome assembly, chromosome: 9.
OY720333.1:143441-143460
ATACAGATATGTTAACAGCTACCTCATACA143441GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCATCA
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:142373-142392
ATGTTAACAACTTAACAGCTACCTCGTACA142373GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCGTCA
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:154473-154492
ATACAGATATGTTAACAGCTACCTCATACA154473GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCGTCA
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:143857-143876
ATACAGATATGTTAACAGCTACCTCATACA143857GAAGCATGTAGCCCATCCATTCTGAAATTATAACATCAACCTCCTCGTCA
Quercus cerris genome assembly, chromosome: 6.
OY770011.1:746222-746241
GCATGCACAGTTCTATAATCACCTCATAGA746222GAAGCATGTAGCCCATCCATTCGGAAATTATAACATCAACCTCCTCATCT
JP 2005185101-A/26423: Full length cDNA of plant and the use thereof.
HV091545.1:519-538
TGAAGAAAAAGTCGATGTCATCATATCTGA519ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
SCEPAM2012H11.g AM2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCEPAM2012H11 5', mRNA sequence.
CA083361.1:90-109
CGAAGAAAAAGTTGATGTCATCATATCTGA90ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGCATAATTT
SCCCRZ1003C09.g RZ1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCCCRZ1003C09 5', mRNA sequence.
CA146995.1:467-486
CGAAGAAAAAGTTGATGTCATCATATCTGA467ATGGATGGGCTACATGCTTCTGGATGAGAGTATGCTGGGAAGCATAATTT
SCCCRZ1003H08.g RZ1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCCCRZ1003H08 5', mRNA sequence.
CA147050.1:467-486
CGAAGAAAAAGTTGATGTCATCATATCTGA467ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGCATAATTT
SCEPRZ3087B01.g RZ3 Saccharum hybrid cultivar SP80-3280 cDNA clone SCEPRZ3087B01 5', mRNA sequence.
CA156761.1:468-487
CGAAGAAAAAGTTGATGTCATCATATCTGA468ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGCATAATTT
OSIIEa05M10.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa05M10 5', mRNA sequence.
CB620508.1:509-528
TGAAGAAAAAGTCGATGTCATCATATCTGA509ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
49849rsiceh_20686.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK048345.1:329-348
TGAAGAAAAAGTCGATGTCATCATATCTGA329ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
58844rsicek_14834.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK059682.1:530-549
TGACGAAAAAGTCGATGTCATCATATCTGA530ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATC
53240rsicek_1377.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK062573.1:131-150
TGAAGAAAAAGTCGATGTCATCATATCTGA131ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
71760rsicem_24754.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK066568.1:109-128
TGAAGAAAAAGTCGATGTCATCATATCTGA109ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
85332rsicen_27437.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK084063.1:465-484
TGAAGAAAAAGTCGATGTCATCATATCTGA465ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
GR__Eb04K16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb04K16 5', mRNA sequence.
CO122835.1:282-301
TGACGAGGAGGTTGATGTAATAATTTCAGA282ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
EST1054293 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT543653.1:713-732
TGACGAGGAGGTTGATGTAATAATTTCAGA713ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTTG
EST1057666 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT547026.1:664-683
TGACGAGGAGGTTGATGTAATAATTTCAGA664ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
EST1059914 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT549274.1:603-622
TGACGAGGAGGTTGATGTAATAATTTCAGA603ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
EST1062126 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT551486.1:670-689
TGACGAGGAGGTTGATGTAATAATTTCAGA670ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
TSA: Pyrus pyrifolia mRNA, contig: contig_38418unknown.
FX408946.1:270-289
TGATGAGGAGGTTGATGTTATAATTTCAGA270ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGTGTGATCA
TSA: Sesamum indicum Locus_20933_Transcript_1/1_Confidence_1.000_Length_1683 mRNA sequence.
JP651643.1:458-477
TGATGACAAAGTTGATGTTATAGTTTCTGA458ATGGATGGGCTACATGCTTCTTTATGAGAGCATGCTGGGGAGTGTTATTA
TSA: Eriocheir sinensis Unigene7367_JingChaoZuZhi2 mRNA sequence.
JR714912.1:54-73
TCCAGAGAAAGTTGACGTGATTGTCAGTGA54ATGGATGGGCTACATGCTTCTGTATGAGACCATGCTGCCTTCTGTCCTCT
TSA: Eriocheir sinensis Unigene19804_All.Ersiasgt mRNA sequence.
KA675015.1:54-73
TCCAGAGAAAGTTGACGTGATTGTCAGTGA54ATGGATGGGCTACATGCTTCTGTATGAGACCATGCTGCCTTCTGTCCTCT
OR_ABa0212H11.r OR_ABa Oryza ridleyi genomic clone OR_ABa0212H11 3', genomic survey sequence.
DX303007.1:211-230
TGAAGAAAAAGTCGATGTCATCATATCTGA211ATGGATGGGCTACATGCTTCTGTATGAGGTATCTATAAATTCCATGTTTA
Oryza glaberrima DNA, clone: W0001-9-A13-51C05R1, left end.
FT544892.1:201-220
TGAAGAAAAAGTCGATGTCATCATATCTGA201ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa chromosome 10 B1288B10 genomic sequence, complete sequence.
AC146481.2:7549-7568
TGAAGAAAAAGTCGATGTCATCATATCTGA7549ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa Japonica Group cDNA clone:J033070C14, full insert sequence.
AK101865.1:519-538
TGAAGAAAAAGTCGATGTCATCATATCTGA519ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
AP014966.1:18550597-18550616
TGAAGAAAAAGTCGATGTCATCATATCTGA18550597ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 10.
AP027394.1:19333916-19333935
TGAAGAAAAAGTCGATGTCATCATATCTGA19333916ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
CP012618.1:16120009-16120028
TGAAGAAAAAGTCGATGTCATCATATCTGA16120009ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa Indica Group cultivar Shuhui498 chromosome 10, partial sequence.
CP018166.1:20688784-20688803
TGAAGAAAAAGTCGATGTCATCATATCTGA20688784ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Gossypium turneri isolate D10-2 chromosome D10_04.
CP032574.1:47872274-47872293
TGACGAGGAGGTTGATGTAATAATTTCAGA47872274ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACCT
Oryza sativa Indica Group cultivar Minghui 63 chromosome 10.
CP054685.1:20638689-20638708
TGAAGAAAAAGTCGATGTCATCATATCTGA20638689ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 10.
CP056061.1:21054952-21054971
TGAAGAAAAAGTCGATGTCATCATATCTGA21054952ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Jasminum sambac cultivar Hutoumoli linkage group Lg7.
CP073650.1:18250878-18250897
TGATGAAGAAGTTGATGTTATAGTTTCAGA18250878ATGGATGGGCTACATGCTTCTTTATGAGGTGATAATTAGTATCTTATGCG
Oryza sativa Japonica Group cultivar Changxianggeng 1813 chromosome 1.
CP101141.1:19707054-19707073
TGAAGAAAAAGTCGATGTCATCATATCTGA19707054ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Gossypium herbaceum isolate Zhongcao1 chromosome 4.
CP106690.1:108086064-108086083
TGACGAGGAGGTTGATGTAATAATTTCAGA108086064ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACCT
Gossypium bickii isolate GPG1lz chromosome 4.
CP106717.1:111201402-111201421
TGACGAGGAGGTTGATGTAATAATTTCAGA111201402ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACCT
Gossypium rotundifolium isolate GPK201 chromosome 4.
CP106725.1:170388914-170388933
TGACGAGGAGGTTGATGTAATAATTTCAGA170388914ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACCT
Quercus variabilis isolate HB chromosome 1a.
CP129445.1:2026659-2026678
AGATGAGGAGGTTGATGTTATAATTTCCGA2026659ATGGATGGGCTACATGCTTCTCTATGAGGTGATTATAGAACTGTGCATGC
Salicornia ramosissima genome assembly, chromosome: 6.
OX596237.1:56729272-56729291
TGATGAGGAGGTAGATGTGATAATATCTGA56729272ATGGATGGGCTACATGCTTCTTTATGAGGTTAAAATTCAAACATGTGTGT
Oryza sativa genome assembly, chromosome: 10.
OX637255.1:17681497-17681516
TGAAGAAAAAGTCGATGTCATCATATCTGA17681497ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Hibiscus tridactylites genome assembly, chromosome: 3.
OY288267.1:39438857-39438876
TGACGAGGAGGTTGATGTAATAATTTCAGA39438857ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACTC
Hibiscus tridactylites genome assembly, chromosome: 7.
OY288271.1:40850179-40850198
TGACGAGGAGGTTGATGTAATAATTTCAGA40850179ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACTC
Hibiscus tridactylites genome assembly, chromosome: 17.
OY288281.1:48639728-48639747
TGACGAGGAGGTTGATGTAATAATTTCAGA48639728ATGGATGGGCTACATGCTTCTGTATGAGGTAATTGTATTATCCTGAATAT
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:29820493-29820512
TGATGAGGAGGTTGATGTTATAATTTCAGA29820493ATGGATGGGCTACATGCTTCTGTATGAGGTAGCTGTTAACGTATCTGTAT
Cornus suecica genome assembly, chromosome: 8.
OY998245.1:23708981-23709000
CGATGAAGAGGTTGATGTAATCATTTCAGA23708981ATGGATGGGCTACATGCTTCTGTATGAGGTGATTATTCAATTTTTTGCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAGCATGTAGCCCATCCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGCATGTAGCCCATCCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.328 | 0.320 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGCATGTAGCCCATCCAT&k=0&no_gap=0&offset=0&limit=50
0.910 | 0.581 | search_minus_done; http://172.18.8.135:50400/match?q=ATGGATGGGCTACATGCTTC&k=0&no_gap=0&offset=0&limit=15
0.938 | 0.029 | cgi_end;

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