GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:27:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Anas platyrhynchos genome assembly, chromosome: 20.
LS423630.1:3676762-3676781
GTACAGGCACACGTCACCTGTGAAGGTGAT3676762GAAGCCTTGTTCAGTGCAACGAGTTAGTAAAACAGCCATCAGGGTTGGCA
Somateria mollissima genome assembly, chromosome: 19.
OX598321.1:5066657-5066676
GTACAGGCACAGGTCACCTGTGAAGGTGAT5066657GAAGCCTTGTTCAGTGCAACAAGTTAGTAAAACAGCCATCAGGGTTGGCA
Somateria mollissima genome assembly, chromosome: 18.
OX598707.1:2540167-2540186
GTACAGGCACAGGTCACCTGTGAAGGTGAT2540167GAAGCCTTGTTCAGTGCAACAAGTTAGTAAAACAGCCATCAGGGTTGGCA
oei34g06.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ012105.1:321-340
ATGCTTTCTGTTGTTGAAGATTGACAACGA321GAAGCCTTGTTCAGTGCAACGGAGGAAGTCAAGACGTCTCCTCGAATCAC
BONJR01TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONJR01, genomic survey sequence.
BZ442109.1:449-468
ATGCTTTCTGTTGTTGAAGATTGACAACGA449GAAGCCTTGTTCAGTGCAACGGAGGAAGTCAAGACGTCTCCTCGAATCAC
BOT01-18K9TF BOT01 Brassica oleracea genomic clone BOT01-18K9, genomic survey sequence.
FI684028.1:205-224
ATGCTTTCTGTTGTTGAAGATTGACAACGA205GAAGCCTTGTTCAGTGCAACGGAGGAAGTCAAGACGTCTCCTCGAATCAC
Brassica oleracea var. botrytis putative G-protein-coupled transmembrane receptor mRNA, complete cds.
AF227978.1:251-270
ATGCTTTCTGTTGTTGAAGATTGACAACGA251GAAGCCTTGTTCAGTGCAACGGAGGAAGTCAAGACGTCTCCTCGAATCAC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:70338197-70338216
ATGCTTTCTGTTGTTGAAGATTGACAACGA70338197GAAGCCTTGTTCAGTGCAACGGAGGAAGTCAAGACGTCTCCTCGAATCAC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:9306954-9306973
ATGCTTTCTGTTGTTGAAGATTGACAACGA9306954GAAGCCTTGTTCAGTGCAACGGAGGAAGTCAAGACGTCTCCTCGAATCAC
Anas acuta genome assembly, chromosome: 19.
OZ009982.1:8190280-8190299
TGCCAACCCTGATGGCTGTTTTACTAACTT8190280GTTGCACTGAACAAGGCTTCATCACCTTCACAGGTGACCTGTGCCTGTAC
lle31h08.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ063714.1:126-145
GTGATTCGAGGAGACGTCTTGACTTCCTCC126GTTGCACTGAACAAGGCTTCTCGTTGTCAATCTTCAACAACAGAAAGCAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:8949333-8949352
GTGATTCGAGGAGACGTCTTGACTTCCTCC8949333GTTGCACTGAACAAGGCTTCTCGTTGTCAATCTTCAACAACAGAAAGCAT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:8948907-8948926
GTGATTCGAGGAGACGTCTTGACTTCCTCC8948907GTTGCACTGAACAAGGCTTCTCGTTGTCAATCTTCAACAACAGAAAGCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAGCCTTGTTCAGTGCAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGCCTTGTTCAGTGCAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.175 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGCCTTGTTCAGTGCAAC&k=0&no_gap=0&offset=0&limit=50
0.244 | 0.068 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGCACTGAACAAGGCTTC&k=0&no_gap=0&offset=0&limit=41
0.246 | 0.003 | cgi_end;

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