GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:45:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2AD76TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW723347.1:37-58
ACAGACTCATTGATTGTTATATCAGAGCTT37GAAGGAGACCAACCCATCACATTATGAAAACTATATATTCCCATATTCCATA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:18524692-18524713
ACAGACTCGTTGATTGTTATATCGGAGCTT18524692GAAGGAGACCAACCCATCACATTATGAAACTACTATATATTCTATTTTCCAT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:19870251-19870272
ACAGACTCATTGATTGTTATATCAGAGCTT19870251GAAGGAGACCAACCCATCACATTATGAAAACTATATATTCCCATATTCCATA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:19870251-19870272
ACAGACTCATTGATTGTTATATCAGAGCTT19870251GAAGGAGACCAACCCATCACATTATGAAAACTATATATTCCCATATTCCATA
Barbarea vulgaris genome assembly, chromosome: 5.
OY763891.1:3503923-3503944
GAAGACTCATTGATTGTTATATCGGAGCTT3503923GAAGGAGACCAACCCATCACATTGTGAAGTTATATACATTCTCTCATATTCC
RS2AD76JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW728408.1:768-789
TATGGAATATGGGAATATATAGTTTTCATA768ATGTGATGGGTTGGTCTCCTTCAAGCTCTGATATAACAATCAATGAGTCTGT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1713.
FX674409.1:197-218
TATGGAATATGGGAATATATAGTTTTCATA197ATGTGATGGGTTGGTCTCCTTCAAGCTCTGATATAACAATCAATGAGTCTGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_25572.
FX696824.1:143-164
ATGGAAAATAGAATATATAGTAGTTTCATA143ATGTGATGGGTTGGTCTCCTTCAAGCTCCGATATAACAATCAACGAGTCTGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_55304.
FX769160.1:143-164
ATGGAAAATAGAATATATAGTAGTTTCATA143ATGTGATGGGTTGGTCTCCTTCAAGCTCCGATATAACAATCAACGAGTCTGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8662.
FX771742.1:195-216
TATGGAATATGGGAATATATAGTTTTCATA195ATGTGATGGGTTGGTCTCCTTCAAGCTCTGATATAACAATCAATGAGTCTGT
BOIFP28TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFP28, genomic survey sequence.
CC955787.1:453-474
ATGGAAAATAGAATATATAGTAGTTTCATA453ATGTGATGGGTTGGTCTCCTTCAAGCTCCGATATAACAATCAACGAGTCTGT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:28047901-28047922
ATGGAAAATAGAATATATAGTAGTTTCATA28047901ATGTGATGGGTTGGTCTCCTTCAAGCTCCGATATAACAATCAACGAGTCTGT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:22530067-22530088
ATGGAAAATAGAATATATAGTAGTTTCATA22530067ATGTGATGGGTTGGTCTCCTTCAAGCTCCGATATAACAATCAACGAGTCTGT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:43804642-43804663
ATGGAAAATAGAATATATAGTAGTTTCATA43804642ATGTGATGGGTTGGTCTCCTTCAAGCTCCGATATAACAATCAACGAGTCTGT
Brassica rapa genome, scaffold: A02.
LR031573.1:20833312-20833333
ATGGAAAATAGAATATATAGTAGTTTCATA20833312ATGTGATGGGTTGGTCTCCTTCAAGCTCCGATATAACAATCAACGAGTCTGT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:43963696-43963717
ATGGAAAAGAGAATATATAGTAGTTTCATA43963696ATGTGATGGGTTGGTCTCCTTCAAGCTCCGATATAACAATCAACGAGTCTGT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:21736666-21736687
ATGGAAAATAGAATATATAGTAGTTTCATA21736666ATGTGATGGGTTGGTCTCCTTCAAGCTCCGATATAACAATCAACGAGTCTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAGGAGACCAACCCATCACAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGGAGACCAACCCATCACAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.199 | 0.191 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGGAGACCAACCCATCACAT&k=0&no_gap=0&offset=0&limit=50
0.357 | 0.157 | search_minus_done; http://172.18.8.135:50400/match?q=ATGTGATGGGTTGGTCTCCTTC&k=0&no_gap=0&offset=0&limit=45
0.365 | 0.008 | cgi_end;

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