GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:24:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR3AB29TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV548554.1:406-427
TGGATCCCAGAGACCGTGGAGATCTACGAG406GAAGGTTCCAAGTCCGTGAAATTCGATTTCAACAAAAACGTCCCTGAGAACA
RR1C925TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX748206.1:415-436
TGGATCCCAGAGACCGTGGAGATCTACGAG415GAAGGTTCCAAGTCCGTGAAATTCGATTTCAACAAAAACGTCCCTGAGAACA
RR3BV01TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX762698.1:412-433
TGGATCCCAGAGACCGTGGAGATCTACGAG412GAAGGTTCCAAGTCCGTGAAATTCGATTTCAACAAAAA
RR3CX61TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX765970.1:412-433
TGGATCCCAGAGACCGTGGAGATCTACGAG412GAAGGTTCCAAGTCCGTGAAATTCGATTTCAACAAAAACGTCCCTGAGAACA
RR1DQ42TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY899043.1:412-433
TGGATCCCAGAGACCGTGGAGATCTACGAG412GAAGGTTCCAAGTCCGTGAAATTCGATTTCAACAAAAACGTCCCTGAGAACA
RR1F981TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD534667.1:415-436
TGGATCCCAGAGACCGTGGAGATCTACGAG415GAAGGTTCCAAGTCCGTGAAATTCGATTTCAACAAAAACGTCCCTGAGAACA
RR2FK83TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD543403.1:412-433
TGGATCCCAGAGACCGTGGAGATCTACGAG412GAAGGTTCCAAGTCCGTGAAATTCGATTTCAACAGAAACGTCCCTGAGAACA
RR3FN54TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD551669.1:411-432
TGGATCCCAGAGACCGTGGAGATCTACGAG411GAAGGTTCCAAGTCCGTGAAATTCGATTTCAACAAAAACGTCCCTGAGAACA
RS2H179TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD948701.1:415-436
TGGATCCCAGAGACCGTGGAGATCTACGAG415GAAGGTTCCAAGTCCGTGAAATTCGATTTCAACAAAAACGTCCCTGAGAACA
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 6.
CP094636.1:31493392-31493413
TGGATCCCGGAAACCATCGAGATATACAAG31493392GAAGGTTCCAAGTCCGTGAAATTCGATTTCAATAAAAACGTCCCTGAGAACA
Barbarea vulgaris genome assembly, chromosome: 8.
OY763894.1:2347755-2347776
TGGATCCCGGAAACCATCGAGATCTACAAA2347755GAAGGTTCCAAGTCCGTGAAATTCGATTTCAGCAAACACGTTCCTGAGAACA
RR3AB29JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV544205.1:435-456
TGTTCTCAGGGACGTTTTTGTTGAAATCGA435ATTTCACGGACTTGGAACCTTCCTCGTAGATCTCCACGGTCTCTGGGATCCA
RR3BV01JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX766907.1:494-515
TGTTCTCAGGGACGTTTTTGTTGAAATCGA494ATTTCACGGACTTGGAACCTTCCTCGTAGATCTCCACGGTCTCTGGGATCCA
RR3CX61JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX769676.1:489-510
TGTTCTCAGGGACGTTTTTGTTGAAATCGA489ATTTCACGGACTTGGAACCTTCCTCGTAGATCTCCACGGTCTCTGGGATCCA
RR1DQ42JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY894916.1:485-506
TGTTCTCAGGGACGTTTTTGTTGAAATCGA485ATTTCACGGACTTGGAACCTTCCTCGTAGATCTCCACGGTCTCTGGGATCCA
RR1F981JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD530536.1:392-413
TGTTCTCAGGGACGTTTTTGTTGAAATCGA392ATTTCACGGACTTGGAACCTTCCTCGTAGATCTCCACGGTCTCTGGGATCCA
RR2FK83JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD539242.1:476-497
TGTTCTCAGGGACGTTTCTGTTGAAATCGA476ATTTCACGGACTTGGAACCTTCCTCGTAGATCTCCACGGTCTCTGGGATCCA
RR4ER92JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD553225.1:483-504
TGTTCTCAGGGACGTTTTTGTTGAAATCGA483ATTTCACGGACTTGGAACCTTCCTCGTAGATCTCCACGGTCTCTGGGATCCA
Camelina sativa cultivar CO46 chromosome 2.
CP131550.1:29008670-29008691
TGTTCTCAGGGACGTTTTTATTGAAATCGA29008670ATTTCACGGACTTGGAACCTTCCTTGTATATCTCGATGGTTTCAGGGATCCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAGGTTCCAAGTCCGTGAAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGGTTCCAAGTCCGTGAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.593 | 0.584 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGGTTCCAAGTCCGTGAAAT&k=0&no_gap=0&offset=0&limit=50
1.000 | 0.407 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTCACGGACTTGGAACCTTC&k=0&no_gap=0&offset=0&limit=39
1.006 | 0.006 | cgi_end;

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