GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:40:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR1BD68JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV532694.1:508-529
GTCTATAACCCACCCAAGACCCGCGGGGAA508GAAGTCAATGAACGCGAATGAGCCAAGATTGGTCTCAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3262.
FX657982.1:970-991
GTCTATAACCCACCCAAGACCCGCGGGGAA970GAAGTCAATGAACGCGAATGAGCCAAGATTGGTCTCAGATTCGAGCACAAGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11861.
FX731337.1:896-917
GTCTATAACCCACCCAAGACCCGCGGGAAA896GAAGTCAATGAACGCGAATGAGCCAAGATTGGTCTCAGATTCGAGCACAAGC
TSA: Raphanus sativus RS26568 mRNA sequence.
JT811115.1:1024-1045
GTCTATAACCCACCCAAGACCCGCGGGGAA1024GAAGTCAATGAACGCGAATGAGCCAAGATTGGTCTCAGATTCGAGCACAAGC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:15417873-15417894
GTCTATAACCCACCCAAGACCCGCGGGGAA15417873GAAGTCAATGAACGCGAATGAGCCAAGATTGGTCTCAGATTCGAGCACAAGC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:15417873-15417894
GTCTATAACCCACCCAAGACCCGCGGGGAA15417873GAAGTCAATGAACGCGAATGAGCCAAGATTGGTCTCAGATTCGAGCACAAGC
RR1BD68TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV528806.1:456-477
GCTTGTGCTCGAATCTGAGACCAATCTTGG456CTCATTCGCGTTCATTGACTTCTTCCCCGCGGGTCTTGGGTGGGTTATAGAC
RR4DT53TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY923652.1:670-691
GCTTGTGCTCGAATCTGAGACCAATCTTGG670CTCATTCGCGTTCATTGACTTCTTCCCCGCGGGTCTTGGGTGGGTTATAGAC
RR4EA48TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY925135.1:648-669
GCTTGTGCTCGAATCTGAGACCAATCTTGG648CTCATTCGCGTTCATTGACTTCTTCCCCGCGGGTCTTGGGTGGGTTATAGAC
RR4EJ81TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD556316.1:688-709
AGCTTGTGCTCGAATCTGAGACAATCTTGG688CTCATTCGCGTTCATTGACTTCTTCCCGCGGGTCTTGGGTGGGTATAGACCG
RS2FD93TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD570394.1:689-710
GCTTGTGCTCGAATCTGAGACCAATCTTGG689CTCATTCGCGTTCATTGACTTCTTCCCGCGGGTCTTGGGTGGGTTATAGACC
RS2GD34TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD946612.1:684-705
GCTTGTGCTCGAATCTGAGACCAATCTTGG684CTCATTCGCGTTCATTGACTTCTTCCCGCGGGTCTTGGGTGGGTTATAGACC
RS2HH41TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD950062.1:689-710
GCTTGTGCTCGAATCTGAGACCAATCTTGG689CTCATTCGCGTTCATTGACTTCTTCCCCGCGGGTCTTGGGTGGGTTATAGAC
Raphanus sativus mRNA, clone: RSCS15J12, 5' end sequence.
FY451291.1:406-427
GCTTGTGCTCGAATCTGAGACCAATCTTGG406CTCATTCGCGTTCATTGACTTCTTCCCCGCGGGTCTTGGGTGGGTTATAGAC
Raphanus sativus mRNA, clone: RSCS18I12, 5' end sequence.
FY452342.1:250-271
GCTTGTGCTCGAATCTGAGACCAATCTTGG250CTCATTCGCGTTCATTGACTTCTTCCCCGCGGGTCTTGGGTGGGTTATAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAGTCAATGAACGCGAATGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGTCAATGAACGCGAATGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.188 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGTCAATGAACGCGAATGAG&k=0&no_gap=0&offset=0&limit=50
0.995 | 0.807 | search_minus_done; http://172.18.8.135:50400/match?q=CTCATTCGCGTTCATTGACTTC&k=0&no_gap=0&offset=0&limit=44
1.002 | 0.006 | cgi_end;

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