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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:47:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Nicotiana tabacum EST, clone nt002159052.
AM803798.1:227-246
AGGCCAGGGAGCTCACATATTTATCTACAG227GAAGTCCCATCGCCAGTAAACTTTATCTACAATGCCTCCACCATTTCGAA
Nicotiana tabacum EST, clone nt002107008.
AM814138.1:152-171
AGGCCAGGGAGCTCACATATTTATCTACAG152GAAGTCCCATCGCCAGTAAACTTTATCTACAATGCCTCCAACATTTCGAA
TSA: Capsicum annuum MGMT_Contig33604 mRNA sequence.
JW083848.1:264-283
CCATGGAGCTTTACACATTTACATCTACAG264GAAGTCCCATCGCCAGTAAACTTTATCTACTATGCCTCCACCATTTCGAA
1095469450152 Global-Ocean-Sampling_GS-32-01-01-1P3-1P6KB marine metagenome genomic clone 1061005871184 3', genomic survey sequence.
EK470436.1:682-701
GTAGAGCTTGAAACAGATAAAGTTAATCTT682GAAGTCCCATCGCCAGTAAAGGGCGTTTTAACTGAAATACATTCAAAAGA
1095515643491 Global-Ocean-Sampling_GS-32-01-01-1P3-1P6KB marine metagenome genomic clone 1061005932519 5', genomic survey sequence.
EK526232.1:219-238
GTAGAGCTTGAAACAGATAAAGTTAATCTT219GAAGTCCCATCGCCAGTAAAGGGCGTTTTAACTGAAATACATTCAAAAGA
1092963871619 Global-Ocean-Sampling_GS-35-01-01-1P5KB marine metagenome genomic clone 1061002419480 5', genomic survey sequence.
ER456650.1:192-211
GTAGAGCTTGAAACAGATAAAGTTAATCTT192GAAGTCCCATCGCCAGTAAAGGGCGTTTTAACTGAAATACATTCAAAAGA
1093018100367 Global-Ocean-Sampling_GS-36-01-01-2P2KB marine metagenome genomic clone 1061002600228 3', genomic survey sequence.
ER626108.1:622-641
GTAGAGCTTGAAACAGATAAAGTTAATCTT622GAAGTCCCATCGCCAGTAAAGGGCGTTTTAACTGAAATACATTCGAAAGA
CHO_OF877xj11r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET802962.1:174-193
AGGCCAGGGAGCTCACATATTTATCTACAG174GAAGTCCCATCGCCAGTAAACTTTATCTACAATGCCTCCACCATTTCGAA
CHO_OF057xi09r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET942527.1:563-582
AGGCCAGGGAGCTCACATATTTATCTACAG563GAAGTCCCATCGCCAGTAAACTTTATCTACAATGCC
CHO_OF4534xo11r1.ab1 CHO_OF4 Nicotiana tabacum genomic 3', genomic survey sequence.
FH613665.1:364-383
AGGCCAGGGAGCTCACATATTTATCTACAG364GAAGTCCCATCGCCAGTAAACTTTATCTACAATGCCTCCACCATTTCGAA
Solanum dulcamara genome assembly, chromosome: 12.
OX359263.1:5449888-5449907
AGGTAATGGAGCTTGGATGTTTATCTACAG5449888GAAGTCCCATCGCCAGTAAACTTTATCTACAATGCCTCCACCATTTCGAA
Andrena praecox genome assembly, chromosome: 1.
OZ010728.1:90801125-90801144
TAAACAACTCCGAAGAGTTAGCACAAGGTT90801125GAAGTCCCATCGCCAGTAAACTATAAGCTGCCAGATAAAGGAACATGAAA
KS08003C12 KS08 Capsicum annuum cDNA, mRNA sequence.
BM067347.1:167-186
TTCGAAATGGTGGAGGCATAGTAGATAAAG167TTTACTGGCGATGGGACTTCCTGTAGATGTAAATGTGTAAAGCTCCATGG
KT7C.108F09F.051219T7 KT7 Nicotiana tabacum cDNA clone KT7C.108F09, mRNA sequence.
EB450652.1:768-787
TTCGAAATGGTGGAGGCATTGTAGATAAAG768TTTACTGGCGATGGGACTTCCTGTAGATAAATATGTGAGCTCCCTGGCCT
NTOM877 Nicotiana tomentosiformis normalized full-length cDNA Library Nicotiana tomentosiformis cDNA 5', mRNA sequence.
JZ960704.1:584-603
TTCGAAATGGTGGAGGCATTGTAGATAAAG584TTTACTGGCGATGGGACTTCCTGTAGATAAATATGTGAGCTCCCTGGCCT
NTOM6908 Nicotiana tomentosiformis normalized full-length cDNA Library Nicotiana tomentosiformis cDNA 5', mRNA sequence.
JZ969342.1:723-742
TTCGAAATGGTGGAGGCATTGTAGATAAAG723TTTACTGGCGATGGGACTTCCTGTAGATAAATATGTGAGCTCCCTGGC
TSA: Petunia integrifolia subsp. inflata PETIN027366:Contig1 mRNA sequence.
JI372975.1:221-240
TTCGAAGTGGTGGAGGCATTGTAGATAAAG221TTTACTGGCGATGGGACTTCTTGTAGATAAATGGCTAAGCCCCCTGGCCT
TSA: Capsicum annuum CM_MegaContig_1059 mRNA sequence.
JW099040.1:788-807
TTCGAAATGGTGGAGGCATAGTAGATAAAG788TTTACTGGCGATGGGACTTCCTGTAGATGTAAATGTGTAAAGCTCCATGG
CHO_OF057xi09f1.ab1 CHO_OF Nicotiana tabacum genomic 5', genomic survey sequence.
ET942463.1:189-208
TTCGAAATGGTGGAGGCATTGTAGATAAAG189TTTACTGGCGATGGGACTTCCTGTAGATAAATATGTGAGCTCCCTGGCCT
CHO_OF4886xh03r1.ab1 CHO_OF4 Nicotiana tabacum genomic 3', genomic survey sequence.
FH573270.1:409-428
TTCGAAATGGTGGAGGCATTGTAGATAAAG409TTTACTGGCGATGGGACTTCCTGTAGATAAATATGTGAGCTCCCTGGCCT
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:222409387-222409406
TTCGAAATGGTGGAGGCATAGTAGATAAAG222409387TTTACTGGCGATGGGACTTCCTGTAGATGTAAATGTGTAAAGCTCCATGG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 10.
CP124710.1:121179444-121179463
TTCGAAATGGTGGAGGCATAGTAGATAAAG121179444TTTACTGGCGATGGGACTTCCTGTAGATATAAATATGTAAAGCTCCATGG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:227257760-227257779
TTCGAAATGGTGGAGGCATAGTAGATAAAG227257760TTTACTGGCGATGGGACTTCCTGTAGATATAAATGTGTAAAGCTCCATGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAAGTCCCATCGCCAGTAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGTCCCATCGCCAGTAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.362 | 0.353 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGTCCCATCGCCAGTAAA&k=0&no_gap=0&offset=0&limit=50
0.854 | 0.492 | search_minus_done; http://172.18.8.135:50400/match?q=TTTACTGGCGATGGGACTTC&k=0&no_gap=0&offset=0&limit=38
0.861 | 0.007 | cgi_end;

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