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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:46:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_4845.
FX698877.1:1318-1337
CTAGGTTGAGCTCCAGAAACAGAACACGAA1318GAAGTCTCTTCGCCGTTGTCGGAATCTTGAGCTGAGTATTGGCCGTTGCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_31465.
FX733158.1:1336-1355
CTAGGTTGAGCTCCAGAAACAGAACACGAA1336GAAGTCTCTTCGCCGTTGTCGGAATCTTGAGATGAGTATTGGCCGTTGCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028P01, complete sequence.
AC189300.2:14261-14280
CTAGGTTGAGCTCCAGAAACAGAACACGAA14261GAAGTCTCTTCGCCGTTGTCGGAATCTTGAGCTGAGTATTGGCCGTTGCA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:27192495-27192514
CTAGGTTGAGCTCCAGAAACAGAACACGAA27192495GAAGTCTCTTCGCCGTTGTCGGAATCTTGAGATGAGTATTGGCCGTTGCA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:27206130-27206149
CTAGGTTGAGCTCCAGAAACAGAACACGAA27206130GAAGTCTCTTCGCCGTTGTCGGAATCTTGAGATGAGTATTGGCCGTTGCA
Brassica rapa genome, scaffold: A03.
LR031572.1:27094818-27094837
CTAGGTTGAGCTCCAGAAACAGAACACGAA27094818GAAGTCTCTTCGCCGTTGTCGGAATCTTGAGCTGAGTATTGGCCGTTGCA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:27221972-27221991
CTAGGTTGAGCTCCAGAAACAGAACACGAA27221972GAAGTCTCTTCGCCGTTGTCGGAATCTTGAGCTGAGTATTGGCCGTTGCA
0213587 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV147653.1:261-280
TGCAACGGCCAATACTCATCTCAAGATTCC261GACAACGGCGAAGAGACTTCTTCGTGTTCTGTTTCTGGAGCTCAACCTAG
BR029870 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-142D10 5', mRNA sequence.
EX045226.1:120-139
TGCAACGGCCAATACTCAGCTCAAGATTCC120GACAACGGCGAAGAGACTTCTTCGTGTTCTGTTTCTGGAGCTCAACCTAG
BR040966 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-016D06 5', mRNA sequence.
EX056322.1:177-196
TGCAACGGCCAATACTCAGCTCAAGATTCC177GACAACGGCGAAGAGACTTCTTCGTGTTCTGTTTCTGGAGCTCAACCTAG
BR045282 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-080F07 5', mRNA sequence.
EX060638.1:419-438
TGCAACGGCCAATACTCAGCTCAAGATTCC419GACAACGGCGAAGAGACTTCTTCGTGTTCTGTTTCTGGAGCTCAACCTAG
BNAPO2GH_T3_021_C04_20JUN2007_028 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454738.1:152-171
TGCAACGGCCAATACTCATCTCAAGATTCC152GACAACGGCGAAGAGACTTCTTCGTGTTCTGTTTCTGGAGCTCAACCTAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045B23, complete sequence.
AC189360.2:10314-10333
TGCAACGGCCAATACTCAGCTCAAGATTCC10314GACAACGGCGAAGAGACTTCTTCGTGTTCTGTTTCTGGAGCTCAACCTAG
Buathra laborator genome assembly, chromosome: 11.
OW203902.1:12631720-12631739
CGCGCGACTAAGACACAGACCTCGCTGAAC12631720GACAACGGCGAAGAGACTTCCGAGCCAAAGGATTCGCAGGAGGCGAAAAG
Microdon myrmicae genome assembly, chromosome: 1.
OZ007496.1:22945773-22945792
TTAGCTGACATGACACACTGGTGTGAAGTG22945773GACAACGGCGAAGAGACTTCGATTGTGTGCTTGTTTGTGTGGGAGGTCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAAGTCTCTTCGCCGTTGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGTCTCTTCGCCGTTGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.176 | 0.167 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGTCTCTTCGCCGTTGTC&k=0&no_gap=0&offset=0&limit=50
0.850 | 0.675 | search_minus_done; http://172.18.8.135:50400/match?q=GACAACGGCGAAGAGACTTC&k=0&no_gap=0&offset=0&limit=43
0.856 | 0.005 | cgi_end;

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