GGGenome | Results

2025-04-07 07:18:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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Mdfw2034b18.y1 Mdfw Malus domestica cDNA clone Mdfw2034b18 5', mRNA sequence.
CN578554.1:3-25

AA3GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGATGACGACA

000921AALA007307HT (AALA) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALA007307, mRNA sequence.
CN864426.1:116-138

GAAGAAGCTTACCTTTGATGAGAGGAAGAA116GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGATGACGACA

Mdfw2064i05.y1 Mdfw Malus domestica cDNA clone Mdfw2064i05 5' similar to SW:RL5_ARATH P49227 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CO067178.1:192-214

CAAGAAGCTTACCTTTGACGAGAGAAAGAA192GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

Mdfw2064h18.y1 Mdfw Malus domestica cDNA clone Mdfw2064h18 5' similar to SW:RL5_ORYSA P49625 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CO067424.1:431-453

CAAGAAGCTTACCTTTGACGAGAGAAAGAA431GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

Mdfw2066b05.y2 Mdfw Malus domestica cDNA clone Mdfw2066b05 5' similar to SW:RL5_SOLME P93779 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CO419389.1:286-308

CAAGAAGCTTACCTTTGACGAGAGGAAGAA286GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

Mdfrt3048g16.y1 Mdfrt Malus domestica cDNA clone Mdfrt3048g16 5' similar to SW:RL5_ARATH P49227 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CO754975.1:117-139

CAAGAAGCTTACCTTTGACGAGAGGAAGAA117GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

Mdfrt3045h05.y1 Mdfrt Malus domestica cDNA clone Mdfrt3045h05 5' similar to SW:RL5_ARATH P49227 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CO756027.1:126-148

CAAGAAGCTTACCTTTGACGAGAGAAAGAA126GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

Mdlv4-4047k14.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4047k14 5' similar to SW:RL5_SOLME P93779 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CX023401.1:201-223

GAAGAAGCTTACCTTTGATGAGAGGAAGAA201GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGATGACGACA

fl_03E11_CC7 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD255001.1:38-60

CAAGAAGCTTACCTTTGACGAGAGGAAGAA38GAAGTTGGTTGAGAGGTTGAAGGCCTTCAACGAAGCTGGTAACGATGAAAACA

Mdwdr7514P20.g1 Apple_EST_Mdwdr Malus domestica cDNA 5' similar to ref|NP_566767.1| 60S ribosomal protein L5 (RPL5A) [Arabidopsis thaliana] gb|AAL06822.1| AT5g39740/MKM21_30 [Arabidopsis thaliana] gb|
GO527586.1:423-445

GAAGAAGCTTACCTTTGATGAGAGGAAGAA423GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGATGACGACA

Mdwdr7513C03.g1 Apple_EST_Mdwdr Malus domestica cDNA 5' similar to ref|NP_566767.1| 60S ribosomal protein L5 (RPL5A) [Arabidopsis thaliana] gb|AAL06822.1| AT5g39740/MKM21_30 [Arabidopsis thaliana] gb|
GO528429.1:442-464

CAAGAAGCTTACCTTTGACGAGAGAAAGAA442GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

Pyrus pyrifolia mRNA, clone: NFW1_01_02, 5' end sequence, expressed in flower bud.
HX761164.1:198-220

GAAGAAGCTTACCTTTGATGAGAGGAAGAA198GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGATGACGACA

Pyrus pyrifolia mRNA, clone: NFW1_05_46, 5' end sequence, expressed in flower bud.
HX761527.1:198-220

GAAGAAGCTTACCTTTGATGAGAGGAAGAA198GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGATGACGACA

TSA: Pyrus pyrifolia mRNA, contig: contig_1648.
FX394961.1:308-330

CAAGAAGCTTACCTTTGATGAGAGGAAGAA308GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAGACA

TSA: Pyrus communis mRNA, contig: lc541.
FX609128.1:843-865

CAAGAAGCTTACCTTTGACGAGAGGAAGAA843GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

TSA: Pyrus communis mRNA, contig: lc868.
FX609455.1:448-470

GAAGAAGCTTACCTTTGATGAGAGGAAGAA448GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGACGACGACA

TSA: Pyrus communis mRNA, contig: lc4706.
FX613293.1:228-250

GAAGAAGCTTACCTTTGATGAGAGGAAGAA228GAAGTTGGTTGAGAGGTTGAAGGCCTTCANTGANCTGGTAACATGACGACAGC

TSA: Pyrus communis mRNA, contig: lc26829.
FX635155.1:187-209

CAAGAAGCTTACCTTTGACGAGAGGAAGAA187GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

TSA: Pyrus communis mRNA, contig: lc31893.
FX639960.1:255-277

CTTGAAGAAGTTACCNGATGAGAGGAAGAA255GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAGCTGGTAACATGACGACAGC

TSA: Pyrus x bretschneideri Unigene41056_XinShao mRNA sequence.
JR632709.1:369-391

GAAGAAGCTTACCTTTGATGAGAGGAAGAA369GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGATGACGACA

Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:35585619-35585641

CAAGAAGCTTACCTTTGACGAGAGAAAGAA35585619GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:25020671-25020693

GAAGAAGCTTACCTTTGATGAGAGGAAGAA25020671GAAGTTGGTTGAGAGGTTGAAGGCTTTCAATGACCTAGCAACGATGACAACAG

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:2386121-2386143

GAAGAAGCTTACCTTTGATGAGAGGAAGAA2386121GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACAATGACGACA

Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:37957669-37957691

CAAGAAGCTTACCTTTGACGAGAGGAAGAA37957669GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:24298722-24298744

GAGGAAGAAGAAGTTGGTTGAGAGGAAGAA24298722GAAGTTGGTTGAGAGGTTGAAGGCTTTCAATGACCTAGCAACGATGACAACAG

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:2483172-2483194

AAAGAAGCTTACCTTTGATGAGAGGAAGAA2483172GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACAATGACGACA

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:2446065-2446087

GAAGAAGCTTACCTTTGATGAGAGGAAGAA2446065GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGATGACGACA

Ilex aquifolium genome assembly, chromosome: 15.
OX637405.1:9612743-9612765

TTTGCATGAGTAATCATTGGGTGTGTAGAG9612743GAAGTTGGTTGAGAGGTTGAAGGAGGAGGTGGAGGTATGACTTTCGATGCCAT

Malus x robusta genome assembly, chromosome: 1.
OY720325.1:2260892-2260914

AAAGAAGCTTACCTTTGATGAGAGGAAGAA2260892GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACAATGACGACA

Malus x robusta genome assembly, chromosome: 7.
OY720331.1:36232803-36232825

CAAGAAGCTTACCTTTGACGAGAGGAAGAA36232803GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGAAAACA

Malus x robusta genome assembly, chromosome: 10.
OY720334.1:23016656-23016678

GAAGAAGCTTACCTTTGATGAGAGGAAGAA23016656GAAGTTGGTTGAGAGGTTGAAGGCTTTCAATGACCTAGCAACGATGACAATAG

Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:2877059-2877081

TAAGAAGCTTACCTTTGATGAGAGGAAGAA2877059GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGATGCTGGTAACGATGACGACA

Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:40736484-40736506

CAAGAAGCTTACCTTTGACGAGAGGAAGAA40736484GAAGTTGGTTGAGAGGTTGAAGGCCTTCAATGAAGCTGGTAACGATGACAACA

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH051_00623m, 5' end sequence.
AB450725.1:322-344

TGTCGTCATCGTTACCAGCATCATTGAAGG322CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTC

Mdlv4-4042g10.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4042g10 5' similar to SW:RL5_ARATH P49227 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CV826074.1:212-234

TGTTTTCATCGTTACCAGCTTCATTGAAGG212CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCGTCAAAGGCAAGCTTCTTG

Mdlv3_4033f20.y1 Mdlv3 Malus domestica cDNA clone Mdlv3_4033f20 5' similar to SW:RL5_SOLME P93779 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CV882447.1:357-379

TGTCGTCATCGTTACCAGCATCATTGAAGG357CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTC

Mdlv4-4046m15.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4046m15 5' similar to SW:RL5_ORYSA P49625 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CX023050.1:201-223

TGTCGTCATCGTTACCAGCATCATTGAAGG201CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTC

Mdas9008M17.g1 Apple_EST_Mdas Malus domestica cDNA similar to dbj|BAB33422.1| putative senescence-associated protein [Pisum sativum], mRNA sequence.
DR995279.1:260-282

TGTTTTCATCGTTACCAGCTTCATTGAAGG260CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCGTCAAAGGTAAGCTTCTTG

TGTTTTCATCGTTACCAGCTTCATTGAAGG218CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCGTCAAAGGTAAGCTTCTTG

Mdfrs3135L08.g1 Apple_EST_Mdfrs Malus domestica cDNA 5' similar to dbj|BAB33422.1| putative senescence-associated protein [Pisum sativum], mRNA sequence.
DY256504.1:265-287

TGTTTTCATCGTTACCAGCTTCATTGAAGG265CCTTCAACCTCTCAACCAACTTCTTCTTTCTCTCGTCAAAGGTAAGCTTCTTG

Mdfw2034B18_e16569.g1 Mdfw Malus domestica cDNA 5', mRNA sequence.
GO550967.1:403-425

TGTCGTCATCGTTACCAGCATCATTGAAGG403CCTTCAACCTCTCAACCAACTTCTTCCCCAACACAATGGAATTCG

Mdrtp1005D12_e37736.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA 5' similar to dbj|BAB33422.1| putative senescence-associated protein [Pisum sativum], mRNA sequence.
GO561710.1:268-290

TGTTTTCATCGTTACCAGCTTCATTGAAGG268CCTTCAACCTCTCAACCAACTTCTTCTTTCTCTCGTCAAAGGTAAGCTTCTTG

TGTCGTCATCGTTACCAGCATCATTGAAGG352CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTC

Pyrus pyrifolia mRNA, clone: NFW1_01_02, 3' end sequence, expressed in flower.
HX743108.1:48-70

TGTNNNNNNNNTTACNNNCATCATTGAAGG48CCTTCAACCTCTCAACCAACTTCTTCTTCCTCT

Pyrus pyrifolia mRNA, clone: NFW2_33_48, 5' end sequence, expressed in flower bud.
HX764633.1:324-346

TGTCGTCATCGTTACCAGCATCATTGAAGG324CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTC

Pyrus pyrifolia mRNA, clone: NLE2_06_23, 5' end sequence, expressed in leaf.
HX767186.1:322-344

TGTCGTCATCGTTACCAGCATCATTGAAGG322CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTC

Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:386830-386852

TGTTTTCATCGTTACCAGCTTCATTGAAGG386830CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCGTCAAAGGTAAGCTTCTTG

Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:383611-383633

TGTTTTCATCGTTACCAGCTTCATTGAAGG383611CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCGTCAAAGGTAAGCTTCTTG

Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:11896986-11897008

CTGTTGTCATCGTTGCTAGGTCATTGAAAG11896986CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCAACCAACTTCTTCTTCTTC

Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:373042-373064

TGTTTTCATCGTTACCAGCTTCATTGAAGG373042CCTTCAACCTCTCAACCAACTTCTTCTTTCTCTCGTCAAAGGTAAGCTTCTTG

Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:371458-371480

TGTTTTCATCGTTACCAGCTTCATTGAAGG371458CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCGTCAAAGGTAAGCTTCTTG

Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:11681194-11681216

CTGTTGTCATCGTTGCTAGGTCATTGAATG11681194CCTTCAACCTCTCAACCAACTTCTTCTTCCTGTCATCAAATGTAAGCTTGTTC

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:47183255-47183277

TGTCGTCATCGTTACCAGCATCATTGAAGG47183255CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTA

Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:387769-387791

TGTTTTCATCGTTACCAGCTTCATTGAAGG387769CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCGTCAAAGGTAAGCTTCTTG

Malus domestica genome assembly, chromosome: 2.
OU696678.1:372947-372969

TGTTTTCATCGTTACCAGCTTCATTGAAGG372947CCTTCAACCTCTCAACCAACTTCTTCTTTCTCTCGTCAAAGGTAAGCTTCTTG

Malus domestica genome assembly, chromosome: 7.
OU696683.1:11453119-11453141

CTGTTGTCATCGTTGCTAGGTCATTGAAAG11453119CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTC

Malus domestica genome assembly, chromosome: 2.
OU744543.1:368730-368752

TGTTTTCATCGTTACCAGCTTCATTGAAGG368730CCTTCAACCTCTCAACCAACTTCTTCTTTCTCTCGTCAAAGGTAAGCTTCTTG

Malus domestica genome assembly, chromosome: 7.
OU744548.1:12323546-12323568

CTGTTGTCATCGTTGCTAGGTCATTGAAAG12323546CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCAACCAACTTCTTCTTCCTC

Malus domestica genome assembly, chromosome: 15.
OU744556.1:53121616-53121638

TGTCGTCATCATTACCAGCATCATTGAAGG53121616CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTC

Malus domestica genome assembly, chromosome: 2.
OU744954.1:394142-394164

TGTTTTCATCGTTACCAGCTTCATTGAAGG394142CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCGTCAAAGGTAAGCTTCTTG

Malus domestica genome assembly, chromosome: 7.
OU744959.1:11487991-11488013

CTGTTGTCATCGTTGCTAGGTCATTGAAAG11487991CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCAACCAACTTCTTCTTCCTC

Malus domestica genome assembly, chromosome: 2.
OU744992.1:372875-372897

TGTTTTCATCGTTACCAGCTTCATTGAAGG372875CCTTCAACCTCTCAACCAACTTCTTCTTTCTCTCGTCAAAGGTAAGCTTCTTG

Pyrus communis genome assembly, chromosome: 1.
OY757068.1:41750914-41750936

TGTCGTCGTCGTTACCAGCATCATTGAAGG41750914CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCATCAAAGGTAAGCTTCTTC

Pyrus communis genome assembly, chromosome: 10.
OY757077.1:329590-329612

TGTTTTCATCGTTACCAGCTTCATTGAAGG329590CCTTCAACCTCTCAACCAACTTCTTCTTCCTCTCGTCAAAGGTAAGCTTCTTG

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
1.134 | 1.125 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGTTGGTTGAGAGGTTGAAGG&k=0&no_gap=0&offset=0&limit=50
2.124 | 0.990 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTCAACCTCTCAACCAACTTC&k=0&no_gap=0&offset=0&limit=17
2.144 | 0.021 | cgi_end;

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