GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-20 05:27:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 4591 from Patent EP2148885.
HI533619.1:1203-1223
AGCCAGGGTTAGTTTGGAAGAGTTGGCTAA1203GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
Sequence 23793 from patent US 9012723.
HK587447.1:996-1016
AGCCAGGGTTAGTTTGGAAGAGTTGGCTAA996GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
Sequence 67993 from patent US 9029636.
HK977056.1:1008-1028
AGCCAGGGTTAGTTTGCAAGAGTTGGCTAA1008GAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACGCGAAG
Sequence 4591 from patent US 9271455.
HL706954.1:1203-1223
AGCCAGGGTTAGTTTGGAAGAGTTGGCTAA1203GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
MERIP0001G22.B MeriP Pisum sativum Shoot apical meristem ESTs Pisum sativum cDNA clone MERIP0001G22.B, mRNA sequence.
FG529190.1:549-569
TGGCAAGGTTAGCTTGGAAGAACAAGTAAG549GAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACTCGAAG
GLMDS33TFB JCVI-SOY2 Glycine max cDNA 5', mRNA sequence.
FK006501.1:254-274
AGCCAGGGTTAGTTTGGAAGAGTTGGCTAA254GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
GLMDS33TR JCVI-SOY2 Glycine max cDNA 5', mRNA sequence.
FK006502.1:254-274
AGCCAGGGTTAGTTTGGAAGAGTTGGCTAA254GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed30714 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK296082.1:46-66
TGGTTTTTAAGTTTTTAGTTTTTGGTCTAA46GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed32648 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK298016.1:40-60
TTAGTTTGGTTTAAGTTTTAGTTTGGCTAA40GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed34829 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK300197.1:44-64
TTTGGTTTTTAAGTTTTAGTTTTGGTCTAA44GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed35962 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK301330.1:41-61
TAGTTTGGTTTAAGTTTTAGTTTGGTCTAA41GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed37844 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK303212.1:39-59
GTTAGTTTGGTTTAAGTTTAGTTTGGCTAA39GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed48293 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK313661.1:41-61
TAGTTTGGTTTTAAGTTTTAGTTTGGCTAA41GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed50527 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK315895.1:32-52
GGCCGGGGTTAGTTTGGAAGAGTTGGCTAA32GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed62758 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK328126.1:40-60
TTAGTTTGGTTTAAGTTTAGTTTGGTCTAA40GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed63067 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK328435.1:47-67
GGTTTTTTAAGTTTTTTAGTTTTGGTCTAA47GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed83342 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK348710.1:42-62
AGTTTGGTTTTAAGTTTTAGTTTGGTCTAA42GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed89868 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK355236.1:47-67
GGTTTTTAAGTTTTTAGTTTTTGGTTCTAA47GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed100072 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK365440.1:43-63
GTTTGGTTTTAAGTTTTAGTTTTGGTCTAA43GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed101452 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK366820.1:41-61
TAGTTTGGTTTAAGTTTTTAGTTTGGCTAA41GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed103756 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK369124.1:40-60
TTAGTTTGGTTTAAGTTTTAGTTTGGCTAA40GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed104344 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK369712.1:46-66
TGGTTTTTAAGTTTTTTAGTTTTGGTCTAA46GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed115028 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK380396.1:44-64
TTTGGTTTTAAGTTTTTAGTTTTGGTCTAA44GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed118207 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK383575.1:42-62
AGTTTGGTTTAAGTTTTAGTTTTGGTCTAA42GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed118786 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK384154.1:40-60
TTAGTTTGGTTTAAGTTTTAGTTTGGCTAA40GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed126756 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK392124.1:41-61
TAGTTTGGTTTAAGTTAGTTTTGGTTCTAA41GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed131430 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK396798.1:50-70
TTTTTTAAGTTTTTTAGTTTTGGTACTAAA50GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed133377 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK398745.1:42-62
AGTTTGGTTTTAAGTTTTAGTTTGGTCTAA42GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed521792 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD779143.1:32-52
AGCCGGGGTTAGTTTGGAAGAGTTGGCTAA32GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed547978 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD805329.1:33-53
GCCGGGGTTAGTTTGGAAGTAGTTGGCTAA33GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed551466 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD808817.1:33-53
GCCGGGGTTAGTTTGGAAGTAGTTGGCTAA33GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed646990 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD904341.1:32-52
GGCCGGGGTTAGTTTGGAAGAGTTGGCTAA32GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed647593 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD904944.1:33-53
GCCGGGGTTAGTTTGGAAGTAGTTGGCTAA33GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
454GmaGlobSeed743328 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GE000680.1:32-52
AGCCGGGGTTAGTTTGGAAGAGTTGGCTAA32GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
Vicia faba mRNA, clone: VfFES09P15, unspecified EST.
HX906785.1:390-410
TGGCAAGGTTAGCTTGGAAGAACAAGTAAG390GAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACTCGAAG
TSA: Cajanus cajan cultivar UPAS 120 contig07467.UPAS mRNA sequence.
EZ625184.1:437-457
AGCCAGGGTTAGTTTGGAAGAGTTGGCTAA437GAATAGAGGGGATGCCATGTTGCGCTATAAGGAGAAGAAGAAAACTCGAAG
TSA: Pisum sativum Ps_contig_mira-ass_6381 mRNA sequence.
JI903199.1:638-658
TGGCAAGGTTAGCTTGGAAGAACAAGTAAG638GAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACTCGAAG
TSA: Pisum sativum Ps_contig_mira-ass_12576 mRNA sequence.
JI909282.1:50-70
TGGCAAGGTTAGCTTGTAAGAACAAGTAAG50GAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACTCGAAG
Medicago truncatula clone mth2-27f3, complete sequence.
AC133780.33:79128-79148
TGCCAAGATTAGCTTGGAAGAGCACACAAG79128GAATAGAGGGGATGCCATGTTACGGTACAAGGAGAAGAAGAAAACTCGAAG
Glycine max strain Williams 82 clone GM_WBb0113B18, complete sequence.
AC235385.1:51056-51076
AGCCAGGGTTAGTTTGCAAGAGTTGGCTAA51056GAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACGCGAAG
Soybean clone JCVI-FLGm-9F22 unknown mRNA.
BT096420.1:254-274
AGCCAGGGTTAGTTTGGAAGAGTTGGCTAA254GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
Trifolium repens isolate ACLI19 chromosome 07_0cc.
CP125848.1:18182517-18182537
TGCCAAGGTTAGTTTGGAAGAGCAAGCAAG18182517GAATAGAGGGGATGCCATGTTACGCTACAAGGAGAAGAAGAAAACCCGAAG
Trifolium repens isolate ACLI19 chromosome 07_Pall.
CP125849.1:19079474-19079494
TGCCAAGGTTAGCTTGGAAGAGCAAGCAAG19079474GAATAGAGGGGATGCCATGTTACGCTACAAGGAGAAGAAGAAAACCCGAAG
Glycine max cultivar Williams 82 chromosome 16.
CP126441.1:4858758-4858778
AGCCAGGGTTAGTTTGGAAGAGTTGGCTAA4858758GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
Medicago truncatula cultivar Jemalong6 CONSTANS-like protein mRNA, partial cds.
GU065339.1:926-946
TGCCAAGATTAGCTTGGAAGAGCACACAAG926GAATAGAGGGGATGCCATGTTACGGTACAAGGAGAAGAAGAAAACTCGAAG
Medicago truncatula cultivar DZA31516 CONSTANS-like protein mRNA, partial cds.
GU065340.1:923-943
TGCCAAGATTAGCTTGGAAGAGCACACAAG923GAATAGAGGGGATGCCATGTTACGGTACAAGGAGAAGAAGAAAACTCGAAG
Medicago truncatula cultivar Jemalong6 CONSTANS-like protein gene, partial cds.
GU080215.1:4618-4638
TGCCAAGATTAGCTTGGAAGAGCACACAAG4618GAATAGAGGGGATGCCATGTTACGGTACAAGGAGAAGAAGAAAACTCGAAG
Medicago truncatula cultivar DZA315.16 CONSTANS-like protein gene, exons 1 through 4 and partial cds.
GU080216.1:4621-4641
TGCCAAGATTAGCTTGGAAGAGCACACAAG4621GAATAGAGGGGATGCCATGTTACGGTACAAGGAGAAGAAGAAAACTCGAAG
Glycine max CONSTANS-like zinc finger protein (COL16) mRNA, complete cds.
HM068897.1:996-1016
AGCCAGGGTTAGTTTGGAAGAGTTGGCTAA996GAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAG
Glycine max CONSTANS-like zinc finger protein (COL17) mRNA, complete cds.
HM068898.1:1008-1028
AGCCAGGGTTAGTTTGCAAGAGTTGGCTAA1008GAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACGCGAAG
Trifolium subterraneum genome assembly, chromosome: 8.
OX637468.1:18890421-18890441
TGCTAAGGTTGGCTTGGAAGAGCAAGCGAG18890421GAATAGAGGGGATGCCATGTTACGCTACAAGGAGAAGAAGAAAACTCGAAG
Trifolium fragiferum genome assembly, chromosome: 5.
OX940793.1:32010147-32010167
TGCCAAGGTTAGCTTGGAAGAGCAAGCAAG32010147GAATAGAGGGGATGCCATGTTACGCTACAAGGAGAAGAAGAAAACCCGAAG
Medicago lupulina genome assembly, chromosome: 2.
OY283140.1:16422966-16422986
TGCCAAGATTAGCTTGGAAGAGCACACAAG16422966GAATAGAGGGGATGCCATGTTACGCTACAAGGAGAAGAAGAAAACTCGAAG
Astragalus glycyphyllos genome assembly, chromosome: 6.
OY754312.1:47174082-47174102
AGCAAAGTTTAGCTTGGAAGAGTTAGCAAG47174082GAATAGAGGGGATGCCATGTTACGGTACAAGGAGAAGAAGAAAACTCGAAG
Lathyrus aphaca genome assembly, chromosome: 7.
OZ014525.1:146036190-146036210
TGGCAAGGTTAGCTTGGAAGAGCAAGTAAG146036190GAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACTCGAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAATAGAGGGGATGCCATGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATAGAGGGGATGCCATGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.567 | 2.558 | search_plus_done; http://172.18.8.135:50400/match?q=GAATAGAGGGGATGCCATGTT&k=0&no_gap=0&offset=0&limit=50
2.728 | 0.161 | search_minus_done; http://172.18.8.135:50400/match?q=AACATGGCATCCCCTCTATTC&k=0&no_gap=0&offset=0&limit=0
2.728 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).