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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-17 02:56:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

0079830 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV155968.1:412-430
GAACCAGAAACTCTGAAGCTTTAGCACGTT412GAATAGATCCATGTCCTCCATATGATATCTCTCCCCATCCTTTCCAACC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_16553.
FX669422.1:923-941
GAACCAGACGCTCTGAGGCTTTAGCACGTT923GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCCTTCCAACC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_786.
FX694298.1:922-940
GAACCAGAAGCTCTGAGGCTTTAGCACGTT922GAATAGATCCATGTCCTCCATATGATATCTCTCCCCATCCTTTCCAACC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49663.
FX733917.1:827-845
GAACCAGACGCTCTGAGGCTTTAGCACGTT827GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCCTTCCAACC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_22788.
FX736931.1:35-53
ACACCAGAAGCTCTGAGGCTTTAGCACGTT35GAATAGATCCATGTCCTCCATATGATATCTCTCCCCATCCTTTCCAACC
TSA: Raphanus sativus RS03274 mRNA sequence.
JT787821.1:960-978
GAACCAGACGCTCTGAGGCTTTAGCACGTT960GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCCTTCCAACC
TSA: Raphanus sativus RS03275 mRNA sequence.
JT787822.1:960-978
GAACCAGACGCTCTGAGGCTTTAGCACGTT960GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCCTTCCAACC
BoTo46P13/FE BOTO1 Brassica oleracea genomic, genomic survey sequence.
ET051997.1:16-34
AAGCTTTAGCACGTT16GAATAGATCCATGTCCTCCATATGATATCTCGCCCCATCCTTTCCAACC
BoTo06P17/F BOTO1 Brassica oleracea genomic, genomic survey sequence.
FI569241.1:16-34
AAGCTTTAGCACGTT16GAATAGATCCATGTCCTCCATATGATATCTCTCCCCATCCTTTCCAACC
PV_GBb064C23.R PV_GBb Phaseolus vulgaris genomic 3', genomic survey sequence.
JY538871.1:919-937
TTTTAATCTCAATCTGAAAAAGGGAATTTA919GAATAGATCCATGTCCTCCTCAACATAAACCATAGGAAGAATGTATTTA
Raphanus sativus cultivar WK10039 clone RsH014F17, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.
AC255135.1:46105-46123
ACACCAGACGCTCTGAGGCTTTAGCACGTT46105GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCCTTCCAACC
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 1.
CP094631.1:235696-235714
ACACCAGAAACTCTGAAGCTTTAGCACGCT235696GAATAGATCCATGTCCTCCATAAGATATCTCACCCCATCCTTTCCAACC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:182928-182946
ACACCAGAAAGTCTGAAGCTTTAGCACGTT182928GAATAGATCCATGTCCTCCATATGATATCTCTCCCCATCCTTTCCAACC
Camelina sativa cultivar CO46 chromosome 14.
CP131544.1:187823-187841
ACACCAGAAACTCTGAAGCTTTAGCACGCT187823GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCTTTCCAACC
Camelina sativa cultivar CO46 chromosome 3.
CP131552.1:197273-197291
ACACCAGAAACTCTGAAGCTTTAGCACGCT197273GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCTTTCCAACC
Arabis alpina genome assembly, chromosome: 1.
LT669788.1:199075-199093
ACACCAGAAACTCAGAAGCTTTAGAACGTT199075GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCTTTCCAACC
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:24347606-24347624
ACACCAGACGCTCTGAGGCTTTAGCACGTT24347606GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCCTTCCAACC
Cardamine flexuosa genome assembly, chromosome: 1.
OY743214.1:152671-152689
ACACCAGAAACTCTGAAGCTTTAGCACGTT152671GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCAGCCTTTCCAACC
Draba incana genome assembly, chromosome: 5.
OY755206.1:238230-238248
ACACCAGAAACTCTGAAGCTTTAGCACGTT238230GAATAGATCCATGTCCTCCATAAGAAATCTCTCCCCATCCTTTCCAACC
Lepidium didymum genome assembly, chromosome: 2.
OY986992.1:150256-150274
ACACCAGAAACTCGGAAGCTTTAGCATGTT150256GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCTTTCCAACC
Lepidium didymum genome assembly, chromosome: 3.
OY986993.1:144100-144118
ACACCAGAAACTCGGAAGCTTTAGCACGTT144100GAATAGATCCATGTCCTCCATAAGATATCTCTCCCCATCCTTTCCAACC
Nycteola revayana genome assembly, chromosome: 17.
OX344855.2:17393050-17393068
GTTTTAGTGCCATGTGGTTTCTTAACCTTA17393050GAATAGATCCATGTCCTCCCATGGGTGTCGTAAAAGGCGAATAAGGGAC
BNAR01GH_T3_001_D03_09NOV2006_025 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES899850.1:382-400
GGTTGGAAAGGATGGGGAGAGATATCATAT382GGAGGACATGGATCTATTCAACGTGCTAAAGCTTCAGACTTTCTGGTTC
0079917 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156055.1:342-360
GGTTGGAAAGGATGGGGAGAGATATCATAT342GGAGGACATGGATCTATTCAACGTGCTAAAGCTTCAGAGTTTCTGGTTC
CCPd_EST_233 Piriformospora indica colonized with Chinese cabbage roots library Brassica rapa subsp. chinensis cDNA, mRNA sequence.
JZ469414.1:77-95
GGTTGGAAAGGATGGGGAGAGATATCATAT77GGAGGACATGGATCTATTCAACGTGCTAAAGCCTCAGAGCTTCTGGTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_22987.
FX740150.1:31-49
GGTTGGAAAGGATGGGGAGAGATATCATAT31GGAGGACATGGATCTATTCAACGTGCTAAAGCCTCAGAGCTTCTGGTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A10 clone KBrB119O22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234732.1:43485-43503
GGTTGGAAAGGATGGGGAGAGATATCATAT43485GGAGGACATGGATCTATTCAACGTGCTAAAGCCTCAGAGCTTCTGGTGT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69445142-69445160
GGTTGGAAAGGATGGGGAGAGATATCATAT69445142GGAGGACATGGATCTATTCAACGTGCTAAAGCCTCAGAGCTTCTGGTGT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41499573-41499591
GGTTGGAAAGGATGGGGAGAGATATCATAT41499573GGAGGACATGGATCTATTCAACGTGCTAAAGCTTCAGAGTTTCTGGTGT
Brassica rapa genome, scaffold: A09.
LR031568.1:57564801-57564819
GGTTGGAAAGGATGGGGAGAGATATCATAT57564801GGAGGACATGGATCTATTCAACGTGCTAAAGCCTCAGAGCTTCTGGTGT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50740838-50740856
GGTTGGAAAGGATGGGGAGAGATATCATAT50740838GGAGGACATGGATCTATTCAACGTGCTAAAGCTTCAGAGTTTCTGGTGT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:19685345-19685363
GGTTGGAAGGGATGGGGAGAGATATCTTAT19685345GGAGGACATGGATCTATTCAACGTGCTAAAGCCTCAGAGCGTCTGGTGT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:68088286-68088304
GGTTGGAAAGGATGGGGAGAGATATCATAT68088286GGAGGACATGGATCTATTCAACGTGCTAAAGCCTCAGAGCTTCTGGTGT
Sambucus nigra genome assembly, chromosome: 11.
OX422217.1:445503447-445503465
ATTGAATTGCCATTTATTTCACCATCCGTT445503447GGAGGACATGGATCTATTCCTGGTCAGCTAGATGAATTTAGACATCGCC
Draba incana genome assembly, chromosome: 7.
OY755208.1:37008012-37008030
GGTTGGAAAGGATGGGGAGAGATTTCTTAT37008012GGAGGACATGGATCTATTCAACGTGCTAAAGCTTCAGAGTTTCTGGTGT
Cardamine chenopodiifolia genome assembly, chromosome: 1.
OZ000459.1:269007-269025
GGTTGGAAAGGATGGGGAGAGATATCTTAT269007GGAGGACATGGATCTATTCAACGTGCTAAAGCTTCAGAGTTTCTGGTGT
Cardamine chenopodiifolia genome assembly, chromosome: 2.
OZ000460.1:14625091-14625109
GGTTGGAAAGGATGGGGAGAAATATCTTAT14625091GGAGGACATGGATCTATTCAACGTGCTAAATCTTCAGAGCTTCTGGTGT
Nycteola revayana genome assembly, chromosome: 17.
OX344855.2:17379813-17379831
GTCCCTTAGTCGCCTTTTACGACACCCATG17379813GGAGGACATGGATCTATTCTAAGCCAGAAACCACACGGCACTAAAACTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAATAGATCCATGTCCTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATAGATCCATGTCCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.376 | 0.367 | search_plus_done; http://172.18.8.135:50400/match?q=GAATAGATCCATGTCCTCC&k=0&no_gap=0&offset=0&limit=50
0.823 | 0.447 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGGACATGGATCTATTC&k=0&no_gap=0&offset=0&limit=28
0.834 | 0.011 | cgi_end;

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