GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 15:40:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium subterraneum genome assembly, chromosome: 5.
OX637465.1:46555606-46555628
ATCACTCTCATTACTCTTAAGAGTAGAGTT46555606GAATCAGGGGAAGGTGCATCGTCAAGATTTTGCACAATTTGAGTTAAGGATAG
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:56936850-56936872
ATCACTCTCATTACTCTTAAGAGAAGAGTT56936850GAATCAGGGGAAGGTGCATCGTCAAGATTTTGCACAATTTGAGTTAAGGATAG
Trifolium repens mRNA, clone: WCC02a20_017, unspecified EST.
FY454967.1:283-305
CTATCCTTAACTCAAATTGTGCAAAATCTT283GACGATGCACCTTCCCCTGATTCCAATCTTCTCTTAAGAGTAATGAGAGTAAT
Trifolium repens mRNA, clone: WCC03j14_022, unspecified EST.
FY455263.1:301-323
CTATCCTTAACTCAAATTGTGCAAAATCTT301GACGATGCACCTTCCCCTGATTCCAATCTTCTCTTAAGAGTAATGAGAGTAAT
Trifolium repens mRNA, clone: WCC03l08_030, unspecified EST.
FY455287.1:306-328
CTATCCTTAACTCAAATTGTGCAAAATCTT306GACGATGCACCTTCCCCTGATTCCACTCTTCTCTTAAGAGTAATGAGAGTGAT
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:8481067-8481089
CTATCCTTAACTCAAATTGTGCAAAATCTC8481067GACGATGCACCTTCCCCTGATTCAACTTTGCTCTTAAGAGTAATGAGAGTGAT
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:8990079-8990101
CTATCCTTAACTCAAATTGTGCAAAATCTT8990079GACGATGCACCTTCCCCTGATTCCAATCTTCTCTTAAGAGTAATGAGAGTAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAATCAGGGGAAGGTGCATCGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATCAGGGGAAGGTGCATCGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=GAATCAGGGGAAGGTGCATCGTC&k=0&no_gap=0&offset=0&limit=50
0.397 | 0.304 | search_minus_done; http://172.18.8.135:50400/match?q=GACGATGCACCTTCCCCTGATTC&k=0&no_gap=0&offset=0&limit=48
0.401 | 0.004 | cgi_end;

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