GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-19 07:21:49, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Cucumis melo subsp. melo EST, clone PSI_19-D07-M13R.
AM723492.2:471-490
TGTGTAGGGAATGAATATATAATCACAAAT471GAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGGTTTTTA
Cucumis melo subsp. melo EST, clone 15d_08-A11-M13R.
AM737999.2:471-490
TGTGTAGGGAATGAATATATAATCACAAAT471GAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGGTTTTTA
AL01003X1G05.f1 AL01-normalized and subtracted library Citrullus lanatus cDNA clone AL01003X1G05.f1, mRNA sequence.
DV737218.1:421-440
TTTGATGATTTTTGTTTATTTGTAGGGAAT421GAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTA
UN-590 Melon phloem library UN Cucumis melo cDNA clone PH18F2, mRNA sequence.
EB715954.1:472-491
TGTGTAGGGAATGAATATATAATCACAAAT472GAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGGTTTTTA
EST00360 Watermelon fruit normalization and subtraction library Citrullus lanatus cDNA clone WMN04D09, mRNA sequence.
GD174151.1:307-326
TTTGATGATTTTTGTTTATTTGTAGGGAAT307GAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTA
EST05286 Watermelon fruit normalization and subtraction library Citrullus lanatus cDNA clone WMN61C09, mRNA sequence.
GD179077.1:380-399
TTTGATGATTTTTGTTTATTTGTAGGGAAT380GAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTA
Philonthus cognatus genome assembly, chromosome: 1.
OW052241.1:159842686-159842705
ATTTCGGAACGATTTACAATTTCTACGTAT159842686GAATCCCCATGATTTGAAGCAATCTTGTGCAACATTATTAATATGCACAT
Octopus vulgaris genome assembly, chromosome: 3.
OX597816.1:6762358-6762377
TTTTCCATCTTTTTGAGGCTCTGTTCGAAT6762358GAATCCCCATGATTTGAAGCATCTGGGCGATATGTGGTACATATTACCAT
TSA: Euphorbia fischeriana EFI_004551 mRNA sequence.
JL057578.1:1222-1241
GGCGAAAGCAATTCTTTCCTCCGGTGCCTT1222GCTTCAAATCATGGGGATTCTTGATTCCGCCACTTCACGAGCAGCAAAGG
Cucumis melo subsp. melo cultivar PIT92 linkage group VIII clone Cm31_G08, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
HM854786.1:91717-91736
TAAAAACCTTAAATCTCACCATGATTAAAA91717GCTTCAAATCATGGGGATTCATTTGTGATTATATATTCATTCCCTACACA
Cucumis melo isolate PI 511890 chromosome 6.
CP136105.1:5843641-5843660
TAAAAACCTTAAATCTCACCATGATTAAAA5843641GCTTCAAATCATGGGGATTCATTTGTGATTATATATTCATTCCCTACACA
Citrullus lanatus cultivar Allsugar chromosome 5.
CP155013.1:6940298-6940317
TAAAAAGCTTAAATCTCACCATGATTAAAA6940298GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar Charleston Gray chromosome 5.
CP155146.1:6788494-6788513
TAAAAAGCTTAAATCTCACCATGATTAAAA6788494GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar Calhoun Gray chromosome 5.
CP155157.1:6793049-6793068
TAAAAAGCTTAAATCTCACCATGATTAAAA6793049GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar PKR6 chromosome 5.
CP155168.1:6852010-6852029
TAAAAAGCTTAAATCTCACCATGATTAAAA6852010GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar Sugarlee chromosome 5.
CP155179.1:6866527-6866546
TAAAAAGCTTAAATCTCACCATGATTAAAA6866527GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar ShiHongNo2 chromosome 5.
CP155190.1:6867079-6867098
TAAAAAGCTTAAATCTCACCATGATTAAAA6867079GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar PI 288522 chromosome 5.
CP155201.1:6821007-6821026
TAAAAAGCTTAAATCTCACCATGATTAAAA6821007GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar DaBanHongZiGua chromosome 5.
CP155212.1:6783560-6783579
TAAAAAGCTTAAATCTCACCATGATTAAAA6783560GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar PI 381740 chromosome 5.
CP155223.1:6879677-6879696
TAAAAAGCTTAAATCTCACCATGATTAAAA6879677GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar SanBaiGua chromosome 5.
CP155234.1:6908989-6909008
TAAAAAGCTTAAATCTCACCATGATTAAAA6908989GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar PI 254622 chromosome 5.
CP155245.1:6693673-6693692
TAAAAAGCTTAAATCTCACCATGATTAAAA6693673GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus cultivar HeiShanRen chromosome 5.
CP155256.1:6940298-6940317
TAAAAAGCTTAAATCTCACCATGATTAAAA6940298GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus amarus cultivar PI 296341-FR chromosome 5.
CP155267.1:7673492-7673511
AAAGCTTTTTAAATCTCACCATGATTAAAA7673492GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus amarus cultivar PI 189225 chromosome 5.
CP155278.1:7506371-7506390
AAAGCTTTTTAAATCTCACCATGATTAAAA7506371GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus amarus cultivar RCAT 055816 chromosome 5.
CP155289.1:7158684-7158703
AAAGCTTTTTAAATCTCACCATGATTAAAA7158684GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus amarus cultivar PI 271769 chromosome 5.
CP155300.1:7164053-7164072
AAAGCTTTTTAAATCTCACCATGATTAAAA7164053GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus subsp. mucosospermus cultivar PI 595203 chromosome 5.
CP155311.1:6728847-6728866
TAAAAAGCTTAAATCTCACCATGATTAAAA6728847GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus amarus cultivar PI 482276 chromosome 5.
CP155322.1:7166011-7166030
AAAGCTTTTTAAATCTCACCATGATTAAAA7166011GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus lanatus subsp. mucosospermus cultivar PI 532732 chromosome 5.
CP155333.1:6964330-6964349
TAAAAAGCTTAAATCTCACCATGATTAAAA6964330GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAAATCATCAAA
Citrullus naudinianus cultivar PI 596694M chromosome 5.
CP155366.1:7985519-7985538
TTAAAACCTTAAATCTCACCATGATTAAAA7985519GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAATCATCAACT
Citrullus rehmii cultivar PI 670011 chromosome 5.
CP155399.1:7539489-7539508
TAAAAAGCTTAAATCTCACCATGATTAAAA7539489GCTTCAAATCATGGGGATTCATTCCCTACAAATAAACAAAATCATCAAAC
Citrullus ecirrhosus cultivar PI 673135 chromosome 5.
CP155410.1:6916893-6916912
TAAAAAGCTTAAATCTCACCATGATTAAAA6916893GCTTCAAATCATGGGGATTCATTCCCTACAAATTACAAAATAAACAAAAT
Cucumis melo genomic scaffold, anchoredscaffold00006.
LN681848.1:5753871-5753890
TAAAAACCTTAAATCTCACCATGATTAAAA5753871GCTTCAAATCATGGGGATTCATTTGTGATTATATATTCATTCCCTACACA
Cucumis melo genomic chromosome, chr_6.
LN713260.1:5753871-5753890
TAAAAACCTTAAATCTCACCATGATTAAAA5753871GCTTCAAATCATGGGGATTCATTTGTGATTATATATTCATTCCCTACACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAATCCCCATGATTTGAAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATCCCCATGATTTGAAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.363 | 0.354 | search_plus_done; http://172.18.8.135:50800/match?q=GAATCCCCATGATTTGAAGC&k=0&no_gap=0&offset=0&limit=50
0.424 | 0.061 | search_minus_done; http://172.18.8.135:50800/match?q=GCTTCAAATCATGGGGATTC&k=0&no_gap=0&offset=0&limit=42
0.442 | 0.018 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).