GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:20:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene58093_XinShao mRNA sequence.
JR646891.1:630-649
AAAAGAATCTGCCCCCAGTTGGCTTTTATC630GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Fragaria x ananassa cultivar Benihoppe chromosome 8.
CP139768.1:15473461-15473480
GAAGGAATCAGCCCCAAGTTGGCTTTTATC15473461GAATCGCACTTTCACAGCCACCATTCTTCCATTTGGAAGTTTTCCAAGGT
Fragaria x ananassa cultivar Benihoppe chromosome 7.
CP139769.1:22398511-22398530
GAAGGAATCAGCCCCAAGTTGGCTTTTATC22398511GAATCGCACTTTCACAGCCACCATTCTTCCATTTGGAAGTTTTCCAAGGT
Fragaria x ananassa cultivar Benihoppe chromosome 6.
CP139770.1:15579085-15579104
GAAGGAATCAGCCCCAAGTTGGCTTTTATC15579085GAATCGCACTTTCACAGCCACCATTCTTCCATTTGGAAGTTTTCCAAGGT
Fragaria x ananassa cultivar Benihoppe chromosome 5.
CP139771.1:15706750-15706769
GAAGGAATCAGCCCCAAGTTGGCTTTTATC15706750GAATCGCACTTTCACAGCCACCATTCTTCCATTTGGAAGTTTTCCAAGGT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:27299413-27299432
AAAAGAATCTGCCCCGAGTTGGCTTTTATC27299413GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:26292542-26292561
AAAAGAATCTGCCCCGAGTTGGCTTTTATC26292542GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:26843655-26843674
AAAAGAATCTGCCCCGAGTTGGCTTTTATC26843655GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:25853772-25853791
AAAAGAATCTGCCCCGAGTTGGCTTTTATC25853772GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Potentilla anserina genome assembly, chromosome: 2.
OW176982.1:17544211-17544230
AAAAGAATCTGCCCCAAGTTGGCTTTTGTC17544211GAATCGCACTTTCACAGCCACCATTCTTCCATTGGAAAGCTTTCCTAGGT
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:26317732-26317751
AAAAGAATCTGCCCCGAGTTGGCTTTTATC26317732GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:26704320-26704339
AAAAGAATCTGCCCCGAGTTGGCTTTTATC26704320GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18705076-18705095
AAAAGAATCTGCCCCCAGTTGGCTTTTATC18705076GAATCGCACTTTCACAGCCACCATGTTTCCATCCGAAAGCTTTCCAAGGT
Eimeria praecox genome assembly, chromosome: 3.
OY986948.1:1702751-1702770
ACTGACGTGCAGGTGACCCTGGACACCCTA1702751GAATCGCACTTTCACAGCCAAGCACACGGGGTCACGAGGGTTCGAATCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAATCGCACTTTCACAGCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATCGCACTTTCACAGCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.131 | 0.122 | search_plus_done; http://172.18.8.135:50400/match?q=GAATCGCACTTTCACAGCCA&k=0&no_gap=0&offset=0&limit=50
0.156 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCTGTGAAAGTGCGATTC&k=0&no_gap=0&offset=0&limit=36
0.156 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).