GGGenome | Results

2025-04-09 15:22:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence.
AC189266.2:15732-15751

GAATCAAATAATCAAAAAAAAAAGTAAAAA15732GAATCGTGGATAGCTTCTGGAGACTTCTTTTGGTGTTCTCTGTTCAAGTG

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:5610157-5610176

AGAATCAAATAATCAAAAAAAAAAAAAAAA5610157GAATCGTGGATAGCTTCTGGAGACTTCTTCTGGTGTTCTCTGTTTCAAGT

Brassica napus genome assembly, chromosome: A09.
HG994363.1:5085455-5085474

AGAATCAAATAATCAAAAAAAAAAAAAAAA5085455GAATCGTGGATAGCTTCTGGAGACTTCTTCTGGTGTTCTCTGTTTCAAGT

Brassica rapa genome, scaffold: A09.
LR031568.1:5208055-5208074

GAATCAAATAATCAAAAAAAAAAAAAAAAA5208055GAATCGTGGATAGCTTCTGGAGACTTCTTCTGGTGTTCTCTGTTTCAAGT

Brassica rapa genome assembly, chromosome: A09.
LS974625.2:5410378-5410397

AAGAATCAAATAATCAAAAAAAAAAAAAAA5410378GAATCGTGGATAGCTTCTGGAGACTTCTTCTGGTGTTCTCTGTTTCAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.114 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=GAATCGTGGATAGCTTCTGG&k=0&no_gap=0&offset=0&limit=50
0.139 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGAAGCTATCCACGATTC&k=0&no_gap=0&offset=0&limit=45
0.139 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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