GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 06:10:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RTPQ1_2_A12.b2_A032 Roots treated with paraquat Pinus taeda cDNA clone RTPQ1_2_A12_A032 3', mRNA sequence.
CX712355.1:92-111
CGAGATTCCTGCGCTCGATACATCATCTGA92GAATTACAAAAACTGTCCTGAGATAGTACCTCTTCAGCCTCAGGCTCAGG
RTMNUT1_33_F12.b1_A029 Roots minus micronutrients Pinus taeda cDNA clone RTMNUT1_33_F12_A029 3', mRNA sequence.
DR180538.1:52-71
CGAGATTCCTGCGCTCGATACATCATCTGA52GAATTACAAAAACTGTCCTGAGATAGTACCTCTTCAGCCTCAGGCTCAGG
TSA: Larix kaempferi PEMC14978.Lakaproemb mRNA sequence.
JR144842.1:211-230
CGAGAATCCTGCGCTCGATACATCATTTGA211GAATTACAAAAACTGTCCTGGGAGAGTACCTCCTCAGGCTCAGGCTCAGG
Chionographis japonica genome assembly, chromosome: 2.
OX393550.1:24312314-24312333
TATGCATCAGTTGTAACACTGCAGTACCAT24312314GAATTACAAAAACTGTCCTGAACTCCAGCTTGGATTGTATTCTAACAAAT
Salmonella enterica subsp. enterica serovar Weltevreden strain H2 chromosome.
CP073319.1:2656708-2656727
CCGGCGATAGACAGCACGGGTTTTAGCCGC2656708GAATTACAAAAACTGTCCTGTCGCGCTAATCAAGCGGAACGCGATTTTTG
Haliaeetus albicilla genome assembly, chromosome: 6.
OX381642.1:6597143-6597162
AGCCTTAAACCTTTGCTTAGGGAATGAAGC6597143CAGGACAGTTTTTGTAATTCCTACCTTTTAAATGTTGCACTATCCTTACT
GQ02803.B7_I06 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02803_I06 5', mRNA sequence.
EX311797.1:494-513
CCTGAGCCTGAGCCTGGGGAGGTACTCTCC494CAGGACAGTTTTTGTAATTCTCCGATGATGTATCGAGCGCAGGACTCTCG
Picea glauca clone GQ02803_I06 mRNA sequence.
BT103877.1:494-513
CCTGAGCCTGAGCCTGGGGAGGTACTCTCC494CAGGACAGTTTTTGTAATTCTCCGATGATGTATCGAGCGCAGGACTCTCG
Pinus taeda isolate 4207 anonymous locus 0_14140_01 genomic sequence.
FJ054177.1:383-402
CCTGAGCCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4223 anonymous locus 0_14140_01 genomic sequence.
FJ054178.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4219 anonymous locus 0_14140_01 genomic sequence.
FJ054179.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4213 anonymous locus 0_14140_01 genomic sequence.
FJ054180.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4215 anonymous locus 0_14140_01 genomic sequence.
FJ054181.1:383-402
CCTGAGCCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4220 anonymous locus 0_14140_01 genomic sequence.
FJ054182.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATCATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4221 anonymous locus 0_14140_01 genomic sequence.
FJ054183.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4210 anonymous locus 0_14140_01 genomic sequence.
FJ054184.1:383-402
CCTGAGCCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4218 anonymous locus 0_14140_01 genomic sequence.
FJ054185.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4206 anonymous locus 0_14140_01 genomic sequence.
FJ054186.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4217 anonymous locus 0_14140_01 genomic sequence.
FJ054187.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATCATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4222 anonymous locus 0_14140_01 genomic sequence.
FJ054188.1:383-402
CCTGAGCCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4214 anonymous locus 0_14140_01 genomic sequence.
FJ054189.1:383-402
CCTGAGCCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4208 anonymous locus 0_14140_01 genomic sequence.
FJ054190.1:383-402
CCTGAGCCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4209 anonymous locus 0_14140_01 genomic sequence.
FJ054191.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4212 anonymous locus 0_14140_01 genomic sequence.
FJ054192.1:383-402
CCTGAGCCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4211 anonymous locus 0_14140_01 genomic sequence.
FJ054193.1:383-402
CCTGAGCCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus taeda isolate 4216 anonymous locus 0_14140_01 genomic sequence.
FJ054194.1:383-402
CCTGAGCCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus radiata isolate 4224 anonymous locus 0_14140_01 genomic sequence.
JQ261971.1:383-402
CCTGAGTCTGAGGCTGAAGAGGTACTATCT383CAGGACAGTTTTTGTAATTCTCAGATGATGTATCGAGCGCAGGAATCTCG
Pinus lambertiana isolate 4225 anonymous locus 0_14140_01 genomic sequence.
JQ261972.1:389-408
CCTGAGTCTGAGGCTGAAGAGGTACTATCC389CAGGACAGTTTTTGTAATTCTCAGATGATGTATCAAGTGCAGGAATCTCG
Triticum aestivum genome assembly, chromosome: 1D.
LR862510.1:8533747-8533766
TTTTTTCACAATTGTGAACGAATTTGAAAA8533747CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
LR862531.1:10190896-10190915
TTTTTTCACAATTGTGAACGAATTTGAAAA10190896CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
LR865481.1:10443757-10443776
TTTTTTCACAATTGTGAACGAATTTGAAAA10443757CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
LR865762.1:10090119-10090138
TTTTTTCACAATTGTGAACGAATTTGAAAA10090119CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
LR878437.1:11033284-11033303
TTTTTTCACAATTGTGAACGAATTTGAAAA11033284CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
LS992082.1:10583305-10583324
TTTTTTCACAATTGTGAACGAATTTGAAAA10583305CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
OU015723.1:10421830-10421849
TTTTTTCACAATTGTGAACGAATTTGAAAA10421830CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
OU343183.1:13021489-13021508
TTTTTTCACAATTGTGAACGAATTTGAAAA13021489CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
OU963874.1:10625353-10625372
TTTTTTCACAATTGTGAACGAATTTGAAAA10625353CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
OV100739.1:12568946-12568965
TTTTTTCACAATTGTGAACGAATTTGAAAA12568946CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
OW530312.1:12568946-12568965
TTTTTTCACAATTGTGAACGAATTTGAAAA12568946CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Triticum aestivum genome assembly, chromosome: 1D.
OX637227.1:8846616-8846635
TTTTTTCACAATTGTGAACGAATTTGAAAA8846616CAGGACAGTTTTTGTAATTCCTGATTTTTTTCAAAAAAACAAATAGTTTT
Carcina quercana genome assembly, chromosome: 7.
OU342433.1:452363-452382
TGCATGTCGCGGTAACACTTGGCAGGCTGA452363CAGGACAGTTTTTGTAATTCCATACATTCCCAGACGGTACTGTAATTTCC
Papilio machaon genome assembly, chromosome: 13.
OU538770.1:226353-226372
TCAAACTTTTAAAACACCAAAATAATATAC226353CAGGACAGTTTTTGTAATTCAATTACTACTGTAAACTAATCGATAATTGT
Cylloceria caligata genome assembly, chromosome: 8.
OZ012710.1:4519725-4519744
ACATATACGGATCATGTCAATTGACTGTGT4519725CAGGACAGTTTTTGTAATTCACATCAAGGTATAAATTAAAATATAATAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAATTACAAAAACTGTCCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATTACAAAAACTGTCCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.179 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=GAATTACAAAAACTGTCCTG&k=0&no_gap=0&offset=0&limit=50
0.320 | 0.140 | search_minus_done; http://172.18.8.135:50400/match?q=CAGGACAGTTTTTGTAATTC&k=0&no_gap=0&offset=0&limit=45
0.344 | 0.025 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).