GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 12:13:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

csa01-3ms4-e06 Csa01 Cucumis sativus cDNA clone csa01-3ms4-e06 5', mRNA sequence.
CV000999.1:220-243
AAAAAGCATAATTACTCTGCTGAGATGTCG220GAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACT
Cs302 Cucumis sativus Jinyan No. 4 suppressive subtractive hybridization (SSH) library Cucumis sativus cDNA clone 302, mRNA sequence.
JG391951.1:56-79
AAAAAGCATAATTACTCTGCTGAGATGTCG56GAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACT
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_871, mRNA sequence.
JW919040.1:338-361
AAAAAGCATAATTACTCTGCTGAGATGTCG338GAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACT
Cuc2_2_B06 Cucumber fruit development cDNA library Cucumis sativus cDNA, mRNA sequence.
DN909636.1:329-352
AGTGGAAGCAGCTCGACCAATTTGAGATTT329GGGTTCAAAAACCCAATTGAATTCCGACATCTCAGCAGAGTAATTATGCTTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAATTCAATTGGGTTTTTGAACCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATTCAATTGGGTTTTTGAACCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.236 | 0.227 | search_plus_done; http://172.18.8.135:50400/match?q=GAATTCAATTGGGTTTTTGAACCC&k=0&no_gap=0&offset=0&limit=50
0.292 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=GGGTTCAAAAACCCAATTGAATTC&k=0&no_gap=0&offset=0&limit=47
0.293 | 0.001 | cgi_end;

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