GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 05:11:41, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Cucumis melo subsp. melo cultivar PIT92 linkage group V clone Cm43_H20; Cm13_J04; Cm14_M22, *** SEQUENCING IN PROGRESS ***, 10 ordered pieces.
HM854749.1:168705-168733
TAATGTTTTTAAAGTTTTATAAATAAATAT168705GAATTCACTGTAATTATAAAAATTATTAGTTTGATTATATATTAGTGAACGATACTCTT
Cucumis melo genomic scaffold, unassembled_sequence31762.
LN684269.1:201-229
TAATGTTTTTAAAGTTTTATAAATAAATAT201GAATTCACTGTAATTATAAAAATTATTAGTTTGATTATATATTAGTGAACGATACTCTT
Cucumis melo cultivar PI161375 clone Cme-B-I-24K14, complete sequence.
MW280194.1:72673-72701
TAATGTTTTTAAAGTTTTATAAATAAATAT72673GAATTCACTGTAATTATAAAAATTATTAGTTTGATTATATATTAGTGAACGATACTCTT
Cucumis melo cultivar PI161375 clone Cme-B-I-25K22, complete sequence.
MW280197.1:10242-10270
TAATGTTTTTAAAGTTTTATAAATAAATAT10242GAATTCACTGTAATTATAAAAATTATTAGTTTGATTATATATTAGTGAACGATACTCTT
UNVERIFIED: Cucumis melo subsp. melo clone DOUBLON_Contig331 genomic sequence.
MW591951.1:3595613-3595641
AAGAGTATCGTTCACTAATATATAATCAAA3595613CTAATAATTTTTATAATTACAGTGAATTCATATTTATTTATAAAACTTTAAAAACATTA
UNVERIFIED: Cucumis melo subsp. melo clone ANSO77_Contig_104 genomic sequence.
MW591952.1:3639397-3639425
AAGAGTATCGTTCACTAATATATAATCAAA3639397CTAATAATTTTTATAATTACAGTGAATTCATATTTATTTATAAAACTTTAAAAACATTA
UNVERIFIED: Cucumis melo subsp. agrestis clone Cme-B-I-25K22_24K14 genomic sequence.
MW591954.1:126966-126994
AAGAGTATCGTTCACTAATATATAATCAAA126966CTAATAATTTTTATAATTACAGTGAATTCATATTTATTTATAAAACTTTAAAAACATTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAATTCACTGTAATTATAAAAATTATTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATTCACTGTAATTATAAAAATTATTAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.170 | 0.161 | search_plus_done; http://172.18.8.135:50800/match?q=GAATTCACTGTAATTATAAAAATTATTAG&k=0&no_gap=0&offset=0&limit=50
0.261 | 0.091 | search_minus_done; http://172.18.8.135:50800/match?q=CTAATAATTTTTATAATTACAGTGAATTC&k=0&no_gap=0&offset=0&limit=46
0.264 | 0.002 | cgi_end;

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