GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:15:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus x bretschneideri Unigene11598_XinShao mRNA sequence.
JR606634.1:152-174
GTTGGGTTTTTTAAGAATTCTCCATTCCAA152GAATTGGCAGAGAGATTGAGTGGCCTTAAATGCTTTTGAAATGATTTAACAAC
Malus domestica genome assembly, chromosome: 4.
OU696680.1:22366911-22366933
GTCTGGTTTTTTAAGAATTCTCCATTCAAA22366911GAATTGGCAGAGAGATTGAGTGGCCTTAAATGCTTTTGAAATGATTTAACAAC
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:8109427-8109449
GTCTGGTTTTTTAAGAATTCTCCATTCAAA8109427GAATTGGCAGAGAGATTGAGTGGCCTTAAATGCTTTTGAAATGATTTAACAAC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH004_00590m, 5' end sequence.
AB450692.1:267-289
GTTGTTAAATCATTTCAAAAGCATTTAAGG267CCACTCAATCTCTCTGCCAATTCTTGGAATGGAGAATTCTTAAAAAACCCAAC
Mdlr7008E04.g1 Apple_EST_Mdlr Malus domestica cDNA, mRNA sequence.
DR991437.1:541-563
GTTGTTAAATCATTTCAAAAGCATTTAAGG541CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
010616AVBC004904HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004904, mRNA sequence.
EB127415.1:542-564
GTTGTTAAATCATTTCAAAAGCATTTAAGG542CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
010917AVBC042006PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC042006, mRNA sequence.
EB128869.1:175-197
GTTGTTAAATCATTTCAAAAGCATTTAAGG175CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
011022ABEA002924HT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus domestica cDNA clone ABEA002924, mRNA sequence.
EB147731.1:528-550
GTTGTTAAATCATTTCAAAAGCATTTAAGG528CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
011022ABEA003598HT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus domestica cDNA clone ABEA003598, mRNA sequence.
EB148169.1:553-575
GTTGTTAAATCATTTCAAAAGCATTTAAGG553CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
011030ABEA006947HT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus domestica cDNA clone ABEA006947, mRNA sequence.
EB150601.1:528-550
GTTGTTAAATCATTTCAAAAGCATTTAAGG528CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Pyrus pyrifolia mRNA, clone: NFR4_17_82, 5' end sequence, expressed in fruit.
HX755113.1:283-305
GTTGTTAAATCATTTCAAAAGCATTTAAGG283CCACTCAATCTCTCTGCCAATTCTTGGAATGGAGAATTCTTAAAAAACCCAAC
Pyrus pyrifolia mRNA, clone: NLE2_05_90, 5' end sequence, expressed in leaf.
HX767159.1:236-258
GTTGTTAAATCATTTCAAAAGCATTTAAGN236CCACTCAATCTCTCTGCCAATTCTTGGAATGGAGAATTCTTAAAAAACCCAAC
TSA: Pyrus pyrifolia mRNA, contig: contig_614revcomp.
FX433681.1:401-423
GTTGTTAAATCATTTCAAAAGCATTTAAGG401CCACTCAATCTCTCTGCCAATTCTTGGAATGGAGAATTCTTAAAAAACCCAAC
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:22153357-22153379
GTTGTTAAATCATTTCAAAAGCATTTAAGG22153357CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:23051920-23051942
GTTGTTAAATCATTTCAAAAGCATTTAAGG23051920CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:22083671-22083693
GTTGTTAAATCATTTCAAAAGCATTTAAGG22083671CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:21407325-21407347
GTTGTTAAATCATTTCAAAAGCATTTAAGG21407325CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:22555305-22555327
GTTGTTAAATCATTTCAAAAGCATTTAAGG22555305CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:21372196-21372218
GTTGTTAAATCATTTCAAAAGCATTTAAGG21372196CCACTCAATCTCTCTGCCAATTCTTGGAATGGAGAATTCTTAAAAAACCCAAC
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:22573898-22573920
GTTGTTAAATCATTTCAAAAGCATTTAAGG22573898CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Malus domestica genome assembly, chromosome: 4.
OU744545.1:22780441-22780463
GTTGTTAAATCATTTCAAAAGCATTTAAGG22780441CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Malus domestica genome assembly, chromosome: 4.
OU744956.1:23064678-23064700
GTTGTTAAATCATTTCAAAAGCATTTAAGG23064678CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Malus domestica genome assembly, chromosome: 4.
OU744994.1:22885965-22885987
GTTGTTAAATCATTTCAAAAGCATTTAAGG22885965CCACTCAATCTCTCTGCCAATTCTTTGAATGGAGAATTCTTAAAAAACCAGAC
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:15141106-15141128
GTTGTTAAATCATTTCAAAAGCATTTAAGG15141106CCACTCAATCTCTCTGCCAATTCGTGGAATGGAGAATTCTTAAAAAACCCAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAATTGGCAGAGAGATTGAGTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATTGGCAGAGAGATTGAGTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.279 | 0.270 | search_plus_done; http://172.18.8.135:50400/match?q=GAATTGGCAGAGAGATTGAGTGG&k=0&no_gap=0&offset=0&limit=50
0.922 | 0.644 | search_minus_done; http://172.18.8.135:50400/match?q=CCACTCAATCTCTCTGCCAATTC&k=0&no_gap=0&offset=0&limit=47
0.936 | 0.014 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).