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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-16 23:49:54, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Humulus lupulus var. lupulus mRNA, contig: comp281712_c0_seq3.
LA404065.1:1365-1385
CCTTTCCGACGCGACATAAGTTGCAGAAAG1365GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp281712_c0_seq4.
LA404066.1:1394-1414
CCTTTCCGACGCGACATAAGTTGCAGAAAG1394GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp281712_c0_seq5.
LA404067.1:1372-1392
CCTTTCCGACGCGACATAAGTTGCAGAAAG1372GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus 10-12 DNA, chromosome 2, nearly complete sequence.
AP031503.1:278159391-278159411
CCTTTCCGACGCGACATAAGTTGCAGAAAG278159391GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus 10-12 DNA, chromosome 6, nearly complete sequence.
AP031507.1:127493197-127493217
CCTTTCCAACGCGACATAAGTTGCAGAAAG127493197GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus 10-12 DNA, chromosome 2, nearly complete sequence.
AP031514.1:285162861-285162881
CCTTTCCGACGCGACATAAGTTGCAGAAAG285162861GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus 10-12 DNA, chromosome 6, nearly complete sequence.
AP031518.1:128184644-128184664
CCTTTCCAACGCGACATAAGTTGCAGAAAG128184644GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus Saaz DNA, chromosome 2, nearly complete sequence.
AP031523.1:282953858-282953878
CCTTTCCGACGCGACATAAGTTGCAGAAAG282953858GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus Saaz DNA, chromosome 6, nearly complete sequence.
AP031527.1:127457297-127457317
CCTTTCCAACGCGACATAAGTTGCAGAAAG127457297GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus Saaz DNA, chromosome 2, nearly complete sequence.
AP031533.1:282817979-282817999
CCTTTCCGACGCGACATAAGTTGCAGAAAG282817979GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus Saaz DNA, chromosome 6, nearly complete sequence.
AP031537.1:127475322-127475342
CCTTTCCAACGCGACATAAGTTGCAGAAAG127475322GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus Saaz DNA, chromosome 2, nearly complete sequence.
AP031543.1:281467074-281467094
CCTTTCCGACGCGACATAAGTTGCAGAAAG281467074GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus Saaz DNA, chromosome 6, nearly complete sequence.
AP031547.1:126995593-126995613
CCTTTCCAACGCGACATAAGTTGCAGAAAG126995593GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus 10-12 DNA, chromosome 2, nearly complete sequence.
AP031553.1:284913308-284913328
CCTTTCCGACGCGACATAAGTTGCAGAAAG284913308GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus lupulus 10-12 DNA, chromosome 6, nearly complete sequence.
AP031557.1:129063829-129063849
CCTTTCCAACGCGACATAAGTTGCAGAAAG129063829GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Humulus japonicus seta1 DNA, chromosome 2, nearly complete sequence.
AP038374.1:184489140-184489160
CCTTGCCCACGCGACATAAGTTGCAAAAAG184489140GACAATGATAAACTTCCCTGATATGACAAAGAAGATGAGAAGAATGTTTGA
Euglena gracilis isolate CCAP 1224/5Z chromosome 29.
CP154982.1:2505191-2505211
CCGCCCACCCTGCCGGCTTGAAGCAGCAGG2505191GACAATGATAAACTTCCCTGACTTAACATCACTTCTTTGACGTTGAGTCTC
Euglena gracilis isolate CCAP 1224/5Z chromosome 29.
CP154982.1:4607217-4607237
CCGCCCACCCTGCCGGCTTGAGGCAGCAGG4607217GACAATGATAAACTTCCCTGACTCAACATCACTTCTTTGACGTTGAGTCTC
Cannabis sativa cultivar ERBxHO40_23 chromosome 4.
CP158647.1:79124513-79124533
CCTTTCCGACTCGACATAAGTTGCAGAAAG79124513GACAATGATAAACTTCCCTGATATGACAAAAGGAAGGGACAATGATAATTC
Cucumis melo genomic scaffold, anchoredscaffold00016.
LN681896.1:4064673-4064693
CCTTCCCAAGACGACATAGATTGCAAAAAG4064673GACAATGATAAACTTCCCTGAAATAACAAATAAGGAAATATCTTTTTTAAA
Humulus lupulus genome assembly, chromosome: 7.
OY720654.1:127407654-127407674
CCTTTCCAACGCGACATAAGTTGCAGAAAG127407654GACAATGATAAACTTCCCTGATATGACAAAGAAGAAGAGAAGAATGTTTGA
Verbascum thapsus genome assembly, chromosome: 2.
OY770105.1:26940230-26940250
CTTTTCCAACACGACATAAATTGCAGAAAG26940230GACAATGATAAACTTCCCTGAAAAAAGAAAGACAAGTATGAAGCTTCCTTG
Verbascum thapsus genome assembly, chromosome: 5.
OY770108.1:24679845-24679865
CTTTTCCAACACGGCATAAATTGCAGAAAG24679845GACAATGATAAACTTCCCTGAAAAAGAGAAGACATATATGACGCTCCCATT
Verbascum nigrum genome assembly, chromosome: 9.
OZ200620.1:22128683-22128703
CTTTTCCAACACGACATAAATTGCAGAAAG22128683GACAATGATAAACTTCCCTGAAAAAAGAAAGACAAGTATGAAGCTTCCTTG
Eristalis pertinax genome assembly, chromosome: 2.
OU026146.1:27364634-27364654
CTTGCCTCACCCGTCAAATGCCCCCAGCCA27364634GACAATGATAAACTTCCCTGACAATGGGCAACTTTTTCCGCTTGGCCTCCC
Cucumis melo isolate PI 511890 chromosome 10.
CP136109.1:1597223-1597243
TTGTTTTTTGATATTTCCTTATTTGTTATT1597223TCAGGGAAGTTTATCATTGTCCTTTTTGCAATCTATGTCGTCTTGGGAAGG
Cannabis sativa cultivar ERBxHO40_23 chromosome 4.
CP158657.1:1713482-1713502
TTCTGCAACTTATGTCTTCCTTTTGTCATA1713482TCAGGGAAGTTTATCATTGTCCTTTCTGCAACTTATGTCGCGTCGGAAAGG
Cucumis melo genomic chromosome, chr_10.
LN713264.1:1601317-1601337
TTTAAAAAAGATATTTCCTTATTTGTTATT1601317TCAGGGAAGTTTATCATTGTCCTTTTTGCAATCTATGTCGTCTTGGGAAGG
Humulus lupulus genome assembly, chromosome: 3.
OY720649.1:6120121-6120141
TCAAACATTCTTCTCTTCTTCTTTGTCATA6120121TCAGGGAAGTTTATCATTGTCCTTTCTGCAACTTATGTCGCGTCGGAAAGG
Verbascum nigrum genome assembly, chromosome: 5.
OZ200616.1:253105-253125
AATGAGAGCATCATATATGTCTTCTCTTTG253105TCAGGGAAGTTTATCATTGTCCTTTCTGCAATTTATGCCGTGTTGGAAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GACAATGATAAACTTCCCTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GACAATGATAAACTTCCCTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.243 | 0.234 | search_plus_done; http://172.18.8.135:50800/match?q=GACAATGATAAACTTCCCTGA&k=0&no_gap=0&offset=0&limit=50
0.332 | 0.089 | search_minus_done; http://172.18.8.135:50800/match?q=TCAGGGAAGTTTATCATTGTC&k=0&no_gap=0&offset=0&limit=25
0.335 | 0.003 | cgi_end;

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