GGGenome | Results

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2025-04-09 00:09:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:23195164-23195183

AACTAGACCATAAGCTCTGCTACTTGCTAG23195164GACACAACCTTGGACAGCAAGTGTGCAAGTCTCTGGGCCTCAGCTTCTCC

Metarhizium brunneum strain 4556 chromosome 1, complete sequence.
CP058932.1:1084142-1084161

CGCGACTCTCCATCTCCAACTACACAAACC1084142GACACAACCTTGGACAGCAACTCTTGTGATCAAAAAAATCTAGACACAAT

Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22755253-22755272

CTCATGGCCTACGACCCAAGCCCCAGTCAA22755253GACACAACCTTGGACAGCAATGTAAGCCGCCCATCCCAAGTAATTAAGAG

Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22759324-22759343

CTCGTGGCCTACGACCCAAGCCCCGGTTAA22759324GACACAACCTTGGACAGCAATGTAAGCTGCCCAACCTAAGTAATTAAGAG

Daucus carota isolate Kuroda chromosome 8.
CP125308.1:34666540-34666559

CTCATGGCCTACGACCCAAGCCCCGGTCAA34666540GACACAACCTTGGACAGCAATGTAAGCCGCCCATCCCAAGTAATTCAGAG

Daucus carota isolate Kuroda chromosome 8.
CP125308.1:34672415-34672434

CTCGTGGCCTACGACCCAAGCCCCGGTTAA34672415GACACAACCTTGGACAGCAATGTAAGCTGCCCAGCCCAAGTAATTAATAG

Daucus carota isolate Kuroda chromosome 8.
CP125308.1:35069041-35069060

CTCATGGCCTACGACCCAAGCCCCGGTCAA35069041GACACAACCTTGGACAGCAATGTAAGCCGCCCATCCCAAGTAATTAAGAG

Daucus carota isolate Kuroda chromosome 8.
CP125308.1:35073099-35073118

CTCATGGCCTACGACCCAAGCCCCGGTCAA35073099GACACAACCTTGGACAGCAATGTAAGCTGCCCAGCCCAAGTAATTAAGAG

PG07032G03 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07032G03 5', mRNA sequence.
CN848474.1:336-355

CTCTCAATTACTTGGGTTGGGCTGCTTACA336TTGCTGTCCAAGGTTGTGTCCTTACTGGGGCTTGGGTTATAGGCCATGAA

dca0_000617.z1 Siberian ginseng embryogenic cell cluster library Eleutherococcus senticosus cDNA, mRNA sequence.
JZ511835.1:322-341

CTCTCAACTACTTGGGTTGGGCCGCTTATA322TTGCTGTCCAAGGTTGTGTCCTAACGGGGGCTTGGGTTGTAGGCCATGAA

dca0_000694.z1 Siberian ginseng embryogenic cell cluster library Eleutherococcus senticosus cDNA, mRNA sequence.
JZ511887.1:322-341

CTCTCAACTACTTGGGTTGGGCCGCTTATA322TTGCTGTCCAAGGTTGTGTCCTAACGGGGGCTTGGGTTGTAGGCCATGAA

rdcb0_000286.y1 Siberian ginseng embryogenic cell cluster library Eleutherococcus senticosus cDNA, mRNA sequence.
JZ512148.1:333-352

CTCTCAACTACTTGGGTTGGGCCGCTTATA333TTGCTGTCCAAGGTTGTGTCCTAACGGGGGCTTGGGTTGTAGGCCATGAA

Daucus carota delta12-fatty acid acetylenase gene, partial cds.
AY166774.1:161-180

CTCTTAATTACTTGGGATGGGCGGCTTACA161TTGCTGTCCAAGGTTGTGTCTTAACCGGGGCTTGGGTCGTAGGCCATGAG

Tetradesmus obliquus strain DOE0152z chromosome 1b.
CP126208.1:9462822-9462841

AGCTGCTGTTCTCGTGATCAACTGCGACAC9462822TTGCTGTCCAAGGTTGTGTCGATAGCATGCAACTGTTGCATGTGCAGTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
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JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.112 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=GACACAACCTTGGACAGCAA&k=0&no_gap=0&offset=0&limit=50
0.526 | 0.414 | search_minus_done; http://172.18.8.135:50400/match?q=TTGCTGTCCAAGGTTGTGTC&k=0&no_gap=0&offset=0&limit=42
0.530 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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