GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:21:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus genome assembly, chromosome: C07.
HG994371.1:36205022-36205041
AAGAAATAAAATAGTGGTGCTGATGGGCTC36205022GACAGCCGATGAATCATGTACCAGAGGAGGGCCAACATCTACACCTCGAA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:38836472-38836491
AAGAAATAAAAGAGTGGTGCTGATGGGCTC38836472GACAGCCGATGAATCATGTACCAGAGGAGGGCCAACATCTACACCTCGAA
BOMAZ95TF BO_2_3_KB Brassica oleracea genomic clone BOMAZ95, genomic survey sequence.
BH664063.1:163-182
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG163TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB051H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189382.2:40575-40594
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG40575TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica rapa DELLA protein (RGA1) gene, complete cds.
AY928549.1:827-846
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG827TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:58091435-58091454
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG58091435TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:19728488-19728507
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG19728488TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTATTTTATTTCTT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:42817390-42817409
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG42817390TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica rapa genome, scaffold: A06.
LR031569.1:52979006-52979025
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG52979006TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:56609370-56609389
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG56609370TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GACAGCCGATGAATCATGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GACAGCCGATGAATCATGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=GACAGCCGATGAATCATGTA&k=0&no_gap=0&offset=0&limit=50
0.155 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=TACATGATTCATCGGCTGTC&k=0&no_gap=0&offset=0&limit=48
0.160 | 0.005 | cgi_end;

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