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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:29:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 15731 from patent US 8030546.
GY467956.1:162-181
TTTCAGTGAATTTTGAAAGCTTGATCAACT162GACAGTTCCTCGCTCAAGTTGAAATTTGAAACTCCATTTTAATTTATACA
Sequence 15731 from patent US 10597667.
MO979109.1:162-181
TTTCAGTGAATTTTGAAAGCTTGATCAACT162GACAGTTCCTCGCTCAAGTTGAAATTTGAAACTCCATTTTAATTTATACA
EST1068214 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT557574.1:151-170
TTTCAGTGAATTTTGAAAGCTTGATCAACT151GACAGTTCCTCGCTCAAGTTGAAATTTGAAACTCCATTTTAATTTATACA
EST1069664 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559024.1:162-181
TTTCAGTGAATTTTGAAAGCTTGATCAACT162GACAGTTCCTCGCTCAAGTTGAAATTTGAAACTCCATTTTAATTTATACA
UFL_174_95 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES814153.1:60-79
TTTCAGTGAATTTTGAAAGCTTGATCAACT60GACAGTTCCTCGCTCAAGTTGAAATTTGAAACTCCATTTTAATTTATACA
Gossypium arboreum clone GM105F19-jnd, complete sequence.
AC243098.1:76325-76344
TTTCAGTGAATTTTGAAAGCTTGATCAACT76325GACAGTTCCTCGCTCAAGTTGAAATTTGAAACTTCATTTTAATTTATACA
Gossypioides kirkii chromosome KI_01.
CP032244.1:8943043-8943062
TTTCAGTGAATTTTGAAAGCTTGATCAACT8943043GACAGTTCCTCGCTCAAGTTGAATCCATTTTAATTTTTACAAACATTTTC
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:19882939-19882958
TTTCAGTGAATTTTGAAAGCTTGATCAACT19882939GACAGTTCCTCGCTCAAGTTGAAATTTGAAACTCCATTTTAATTTACACA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:24146164-24146183
TTTCAGTGAATTTTGAAAGCTTGATCAACT24146164GACAGTTCCTCGCTCAAGTTGAAATTTGAAACTCCATTTTAATTTATACA
Gossypium hirsutum clone MX177F15-jon, complete sequence.
AC243164.1:78084-78103
TGTATAAATTAAAATGGAGTTTCAAATTTC78084AACTTGAGCGAGGAACTGTCAGTTGATCAAGCTTTCAAAATTCACTGAAA
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:46075228-46075247
TGTATAAATTAAAATGGAGTTTCAAATTTC46075228AACTTGAGCGAGGAACTGTCAGTTGATCAAGCTTTCAAAATTCACTGAAA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:105786692-105786711
TGTGTAAATTAAAATGGAGTTTCAAATTTC105786692AACTTGAGCGAGGAACTGTCAGTTGATCAAGCTTTCAAAATTCACTGAAA
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:164734575-164734594
TGTATAAATTAAAATGGAGTTTCAAATTTC164734575AACTTGAGCGAGGAACTGTCAGTTGATCAAGCTTTCAAAATTCACTGAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GACAGTTCCTCGCTCAAGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GACAGTTCCTCGCTCAAGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.438 | 0.429 | search_plus_done; http://172.18.8.135:50400/match?q=GACAGTTCCTCGCTCAAGTT&k=0&no_gap=0&offset=0&limit=50
0.546 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=AACTTGAGCGAGGAACTGTC&k=0&no_gap=0&offset=0&limit=41
0.549 | 0.003 | cgi_end;

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