GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 15:03:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum tuberosum GSS, clone GP21.
AJ487347.1:1363-1388
CTATGCTGGCTCACTAATGTGGTGAACTAT1363GACCACTTCCTCATAGACATAATAGTATGAGTTTTAAAAGCTGGAGGTAAAAACAC
Solanum verrucosum cultivar 11H23 chromosome 5.
CP133616.1:3556705-3556730
CTATGCTGGCTCACTAATGTGGTGAACTAT3556705GACCACTTCCTCATAGACATAATAGTATGAGTTTTAAAAGCTGGAGGTAAAAACAC
Solanum lycopersicum Micro-Tom DNA, chromosome 5, draft genome sequence.
AP028939.1:2915599-2915624
GTGTTTAGAACTCCAGCTTTTAAAACTCGT2915599ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG
Solanum lycopersicum cultivar I-3 chromosome 5.
CP023761.1:2644288-2644313
GTGTTTAGAACTCCAGCTTTTAAAACTCGT2644288ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG
Solanum pennellii chromosome ch05, complete genome.
HG975444.1:2879752-2879777
GTGTTTAGAACTCCAGCTTTTAAAACTTGT2879752ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG
Solanum lycopersicum chromosome ch05, complete genome.
HG975517.1:2644291-2644316
GTGTTTAGAACTCCAGCTTTTAAAACTCGT2644291ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG
Solanum lycopersicum genome assembly, chromosome: 5.
OU640348.1:3781030-3781055
GTGTTTAGAACTCCAGCTTTTAAAACTCGT3781030ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GACCACTTCCTCATAGACATAATAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GACCACTTCCTCATAGACATAATAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=GACCACTTCCTCATAGACATAATAGT&k=0&no_gap=0&offset=0&limit=50
0.113 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=ACTATTATGTCTATGAGGAAGTGGTC&k=0&no_gap=0&offset=0&limit=48
0.116 | 0.003 | cgi_end;

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