GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:14:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-54943 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w17i4 5', mRNA sequence.
DV707280.1:417-440
TTGATGTCGTCTTCATACAAACATTTAACA417AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CGN-55461 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w10j2 5', mRNA sequence.
DV707671.1:417-440
TTGATGTCGTCTTCATACAAACATTTAACA417AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CGN-57967 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w18n11 5', mRNA sequence.
DV709618.1:417-440
TTGATGTCGTCTTCATACAAACATTTAACA417AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CR-EST294 Leaf EST Library of robusta coffee cultivar 'CxR' Coffea congensis x Coffea canephora cDNA clone C2G20R 3', mRNA sequence.
EG328909.1:281-304
TTGATGTCGTCTTCATACAAACATTTAACA281AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CR-EST968 Leaf EST Library of robusta coffee cultivar 'CxR' Coffea congensis x Coffea canephora cDNA clone C6G5R 3', mRNA sequence.
EG328910.1:176-199
GTTGATGTCGTCTTCATACAACATTTAACA176AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
TransId-70505 CACAT36FL Coffea arabica cDNA clone CACAT36FL_32_P03_048.F similar to Symbol: None | ubiquitin carboxyl-terminal hydrolase family protein, similar to U4/U6.U5 tri-snRNP-associated 65 kDa
GR980973.1:254-277
TTGATGTCGTCTTCATACAAACATTTAACA254AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CA00-XX-PC1-007-C07-EC.F Coffea arabica PC1 Coffea arabica cDNA clone CA00-XX-PC1-007-C07-EC, mRNA sequence.
GT671046.1:434-457
TTGATGTCGTCTTCATACAAACATTTAACA434AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
AFP0AAA39YE10FM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO560902.1:149-172
TTGATGTCGTCTTCATACAAACATTTAACA149AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GACCCATCTAACTTGCTGCATTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GACCCATCTAACTTGCTGCATTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=GACCCATCTAACTTGCTGCATTTT&k=0&no_gap=0&offset=0&limit=50
0.643 | 0.533 | search_minus_done; http://172.18.8.135:50400/match?q=AAAATGCAGCAAGTTAGATGGGTC&k=0&no_gap=0&offset=0&limit=50
0.649 | 0.006 | cgi_end;

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