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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:36:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

EST536591 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCBJ02 5' sequence, mRNA sequence.
BI433830.1:117-136
GAAGATATCAAGCACATTTCTGAAGCTACG117GACCTAGGCAAGAACGAAGGAGATGAAATTGTTTCGTCCAATCAGGAAAG
Solanum torvum mRNA, clone: TVL07F02, 5'end, expressed in leaf at vegetative stage, 2 months after germination.
FS101844.1:177-196
GAAGATATCAAGCACATTTCTGAAGCTACA177GACCTAGGCAAGAACGAAGGTGATGAAATTGTTTCATTCAATTCGGAAAG
Solanum lycopersicum Micro-Tom DNA, chromosome 6, draft genome sequence.
AP028940.1:40458090-40458109
GAAGATATCAAGCACATTTCTGAAGCTACG40458090GACCTAGGCAAGAACGAAGGAGATGAAATTATTTCTTCCAATCCAGAAAG
Solanum lycopersicum cultivar I-3 chromosome 6.
CP023762.1:37973487-37973506
GAAGATATCAAGCACATTTCTGAAGCTACG37973487GACCTAGGCAAGAACGAAGGAGATGAAATTATTTCTTCCAATCCAGAAAG
Solanum tuberosum cultivar P8 chromosome 6.
CP046679.1:42618565-42618584
GAAGATATCAAGCWCATTTCTGAAGCTACG42618565GACCTAGGCAAGAACGAAGGAGATGAAATTGTTTYGTCCAATCAGGAAAG
Solanum tuberosum cultivar MSH/14-112 chromosome 6.
CP046692.1:42620189-42620208
GAAGMTATCAAGCWCATTTCTGAAGCTACG42620189GACCTAGGCAAGAACGAAGGAGATGAAATTGTTTCGTCCAATCAGGAAAG
Solanum pinnatisectum cultivar CGN17745 chromosome 6.
CP047568.1:42601179-42601198
GAAGATATCAAGCTCATTTCTGAAGCTGCG42601179GACCTAGGCAAGAACGAAGGAGATGAAATTGTTTTGTCCAATCAGGAAAG
Solanum tuberosum cultivar Solyntus chromosome 6.
CP055239.1:43588065-43588084
GAAGATATCAAGCACATTTCTAAAGCTACG43588065GACCTAGGCAAGAACGAAGGAGATGAAATTGTTTCGTCCAATCAGGAAAG
Solanum verrucosum cultivar 11H23 chromosome 6.
CP133617.1:39659301-39659320
GAAGATATCAAGCACATTTCTGAAGCTACG39659301GACCTAGGCAAGAACGAAGGAGATGAAATTGTTTCGTCCAATCAGGAAAG
Solanum pennellii chromosome ch06, complete genome.
HG975445.1:47801130-47801149
GAAGATATCAAGCACATTTCTGAAGCTACA47801130GACCTAGGCAAGAACGAAGGAGATGAAATTGTTTCTTCCAATCCAGAAAG
Solanum lycopersicum chromosome ch06, complete genome.
HG975518.1:34363043-34363062
GAAGATATCAAGCACATTTCTGAAGCTACG34363043GACCTAGGCAAGAACGAAGGAGATGAAATTATTTCTTCCAATCCAGAAAG
Solanum lycopersicum genome assembly, chromosome: 6.
OU640349.1:40399616-40399635
GAAGATATCAAGCACATTTCTGAAGCTACG40399616GACCTAGGCAAGAACGAAGGAGATGAAATTATTTCTTCCAATCCAGAAAG
Solanum tuberosum chromosome 6 clone RHPOTKEY201D07, *** SEQUENCING IN PROGRESS ***, 25 ordered pieces.
AC236850.1:58050-58069
CTTTCCTGATTGGACGAAACAATTTCATCT58050CCTTCGTTCTTGCCTAGGTCCGTAGCTTTAGAAATGTGCTTGATATCTTC
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 7.
CP124713.1:21252144-21252163
CTTTCCAGATTGGACGAAACAATTTCATCA21252144CCTTCGTTCTTGCCTAGGTCCGTAGCTTCAGAAATGTGCTTGATTATCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GACCTAGGCAAGAACGAAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GACCTAGGCAAGAACGAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.271 | 0.263 | search_plus_done; http://172.18.8.135:50400/match?q=GACCTAGGCAAGAACGAAGG&k=0&no_gap=0&offset=0&limit=50
0.375 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTCGTTCTTGCCTAGGTC&k=0&no_gap=0&offset=0&limit=38
0.377 | 0.002 | cgi_end;

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